RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 LACTBL1A8MY62 500 aa16.53■□□□□ 0.24
LIMS3-201ENST00000437679 TISP43B9A030 160 aa16.53■□□□□ 0.24
LIMS3-201ENST00000437679 C1RP00736 705 aa16.53■□□□□ 0.24
LIMS3-201ENST00000437679 RPL17P18621 184 aaKnown RBP16.53■□□□□ 0.24
LIMS3-201ENST00000437679 FGFR3P22607 806 aa16.53■□□□□ 0.24
LIMS3-201ENST00000437679 CMA1P23946 247 aa16.53■□□□□ 0.24
LIMS3-201ENST00000437679 MTHFRP42898 656 aa16.53■□□□□ 0.24
LIMS3-201ENST00000437679 CASP5P51878 434 aa16.53■□□□□ 0.24
LIMS3-201ENST00000437679 SPAG1Q07617 926 aa16.53■□□□□ 0.24
LIMS3-201ENST00000437679 PSMD5Q16401 504 aa16.53■□□□□ 0.24
LIMS3-201ENST00000437679 ATAT1Q5SQI0 421 aa16.53■□□□□ 0.24
LIMS3-201ENST00000437679 CNNM4Q6P4Q7 775 aa16.53■□□□□ 0.24
LIMS3-201ENST00000437679 PALB2Q86YC2 1186 aa16.53■□□□□ 0.24
LIMS3-201ENST00000437679 GLYCTKQ8IVS8 523 aa16.53■□□□□ 0.24
LIMS3-201ENST00000437679 C3orf58Q8NDZ4 430 aa16.53■□□□□ 0.24
LIMS3-201ENST00000437679 TMEM206Q9H813 350 aa16.53■□□□□ 0.24
LIMS3-201ENST00000437679 MAN1C1Q9NR34 630 aa16.53■□□□□ 0.24
LIMS3-201ENST00000437679 CPSF3Q9UKF6 684 aaKnown RBP16.53■□□□□ 0.24
LIMS3-201ENST00000437679 UBQLN1Q9UMX0 589 aaKnown RBP16.53■□□□□ 0.24
LIMS3-201ENST00000437679 C5orf42Q9H799 3197 aa16.53■□□□□ 0.24
LIMS3-201ENST00000437679 VWA8A3KMH1 1905 aa16.53■□□□□ 0.24
LIMS3-201ENST00000437679 CYP3A5P20815 502 aa16.52■□□□□ 0.24
LIMS3-201ENST00000437679 IGFBP6P24592 240 aaPredicted RBP16.52■□□□□ 0.24
LIMS3-201ENST00000437679 BRCC3P46736 316 aa16.52■□□□□ 0.24
LIMS3-201ENST00000437679 ACOT2P49753 483 aa16.52■□□□□ 0.24
LIMS3-201ENST00000437679 NUCB2P80303 420 aa16.52■□□□□ 0.24
LIMS3-201ENST00000437679 KCNA1Q09470 495 aa16.52■□□□□ 0.24
LIMS3-201ENST00000437679 CD300LGQ6UXG3 332 aa16.52■□□□□ 0.24
LIMS3-201ENST00000437679 TMC5Q6UXY8 1006 aa16.52■□□□□ 0.24
LIMS3-201ENST00000437679 LNX1Q8TBB1 728 aaPredicted RBP16.52■□□□□ 0.24
LIMS3-201ENST00000437679 HDAC7Q8WUI4 952 aa16.52■□□□□ 0.24
LIMS3-201ENST00000437679 CHAMP1Q96JM3 812 aa16.52■□□□□ 0.24
LIMS3-201ENST00000437679 RPGRIP1Q96KN7 1286 aa16.52■□□□□ 0.24
LIMS3-201ENST00000437679 IKZF4Q9H2S9 585 aa16.52■□□□□ 0.24
LIMS3-201ENST00000437679 TUBGCP4Q9UGJ1 667 aa16.52■□□□□ 0.24
LIMS3-201ENST00000437679 PLXNA3P51805 1871 aa16.52■□□□□ 0.23
LIMS3-201ENST00000437679 MTCL1Q9Y4B5 1905 aaKnown RBP16.51■□□□□ 0.23
LIMS3-201ENST00000437679 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.51■□□□□ 0.23
LIMS3-201ENST00000437679 I3L4J1 428 aa16.51■□□□□ 0.23
LIMS3-201ENST00000437679 TGM5O43548 720 aa16.51■□□□□ 0.23
LIMS3-201ENST00000437679 PRPF6O94906 941 aaKnown RBP16.51■□□□□ 0.23
LIMS3-201ENST00000437679 ADRB2P07550 413 aa16.51■□□□□ 0.23
LIMS3-201ENST00000437679 SLFN14P0C7P3 912 aa16.51■□□□□ 0.23
LIMS3-201ENST00000437679 PFKFB1P16118 471 aa16.51■□□□□ 0.23
LIMS3-201ENST00000437679 TKTP29401 623 aaKnown RBP16.51■□□□□ 0.23
LIMS3-201ENST00000437679 AFMP43652 599 aa16.51■□□□□ 0.23
LIMS3-201ENST00000437679 POU5F1Q01860 360 aaKnown RBP16.51■□□□□ 0.23
LIMS3-201ENST00000437679 ZBTB6Q15916 424 aa16.51■□□□□ 0.23
LIMS3-201ENST00000437679 FAM26FQ5R3K3 315 aa16.51■□□□□ 0.23
LIMS3-201ENST00000437679 KANK3Q6NY19 840 aa16.51■□□□□ 0.23
LIMS3-201ENST00000437679 ANKS3Q6ZW76 656 aa16.51■□□□□ 0.23
LIMS3-201ENST00000437679 UNC13DQ70J99 1090 aa16.51■□□□□ 0.23
LIMS3-201ENST00000437679 BEST2Q8NFU1 509 aa16.51■□□□□ 0.23
LIMS3-201ENST00000437679 FGFBP2Q9BYJ0 223 aa16.51■□□□□ 0.23
LIMS3-201ENST00000437679 BLZF1Q9H2G9 400 aa16.51■□□□□ 0.23
LIMS3-201ENST00000437679 PLEKHA4Q9H4M7 779 aa16.51■□□□□ 0.23
LIMS3-201ENST00000437679 USP25Q9UHP3 1055 aa16.51■□□□□ 0.23
LIMS3-201ENST00000437679 SERTAD1Q9UHV2 236 aa16.51■□□□□ 0.23
LIMS3-201ENST00000437679 A0A1B0GVL5 298 aa16.5■□□□□ 0.23
LIMS3-201ENST00000437679 LOC730098B7Z3J9 87 aa16.5■□□□□ 0.23
LIMS3-201ENST00000437679 SYN3O14994 580 aa16.5■□□□□ 0.23
LIMS3-201ENST00000437679 LDHAP00338 332 aaKnown RBP16.5■□□□□ 0.23
LIMS3-201ENST00000437679 WEE2P0C1S8 567 aa16.5■□□□□ 0.23
LIMS3-201ENST00000437679 SPATA31D3P0C874 917 aa16.5■□□□□ 0.23
LIMS3-201ENST00000437679 GARTP22102 1010 aa16.5■□□□□ 0.23
LIMS3-201ENST00000437679 ADSSP30520 456 aa16.5■□□□□ 0.23
LIMS3-201ENST00000437679 LRPAP1P30533 357 aa16.5■□□□□ 0.23
LIMS3-201ENST00000437679 MCM4P33991 863 aa16.5■□□□□ 0.23
LIMS3-201ENST00000437679 TMEM132DQ14C87 1099 aa16.5■□□□□ 0.23
LIMS3-201ENST00000437679 JADE1Q6IE81 842 aa16.5■□□□□ 0.23
LIMS3-201ENST00000437679 SPATA31D4Q6ZUB0 917 aa16.5■□□□□ 0.23
LIMS3-201ENST00000437679 GPR149Q86SP6 731 aa16.5■□□□□ 0.23
LIMS3-201ENST00000437679 CMASQ8NFW8 434 aaPredicted RBP16.5■□□□□ 0.23
LIMS3-201ENST00000437679 HPS3Q969F9 1004 aa16.5■□□□□ 0.23
LIMS3-201ENST00000437679 CLSTN3Q9BQT9 956 aa16.5■□□□□ 0.23
LIMS3-201ENST00000437679 POMKQ9H5K3 350 aa16.5■□□□□ 0.23
LIMS3-201ENST00000437679 ASB7Q9H672 318 aa16.5■□□□□ 0.23
LIMS3-201ENST00000437679 CDH22Q9UJ99 828 aa16.5■□□□□ 0.23
LIMS3-201ENST00000437679 DERAQ9Y315 318 aa16.5■□□□□ 0.23
LIMS3-201ENST00000437679 NR2E1Q9Y466 385 aa16.5■□□□□ 0.23
LIMS3-201ENST00000437679 PVALEFA0A1B0GWK0 134 aa16.49■□□□□ 0.23
LIMS3-201ENST00000437679 EIF3DO15371 548 aaKnown RBP eCLIP16.49■□□□□ 0.23
LIMS3-201ENST00000437679 ALADP13716 330 aa16.49■□□□□ 0.23
LIMS3-201ENST00000437679 CUL4BQ13620 913 aa16.49■□□□□ 0.23
LIMS3-201ENST00000437679 SPATA1Q5VX52 437 aa16.49■□□□□ 0.23
LIMS3-201ENST00000437679 ARMCX5Q6P1M9 558 aa16.49■□□□□ 0.23
LIMS3-201ENST00000437679 LILRA6Q6PI73 481 aa16.49■□□□□ 0.23
LIMS3-201ENST00000437679 C15orf39Q6ZRI6 1047 aa16.49■□□□□ 0.23
LIMS3-201ENST00000437679 KREMEN2Q8NCW0 462 aa16.49■□□□□ 0.23
LIMS3-201ENST00000437679 SUSD3Q96L08 255 aa16.49■□□□□ 0.23
LIMS3-201ENST00000437679 FAM213AQ9BRX8 229 aa16.49■□□□□ 0.23
LIMS3-201ENST00000437679 EPHX3Q9H6B9 360 aa16.49■□□□□ 0.23
LIMS3-201ENST00000437679 TSHZ2Q9NRE2 1034 aa16.49■□□□□ 0.23
LIMS3-201ENST00000437679 MTRRQ9UBK8 725 aa16.49■□□□□ 0.23
LIMS3-201ENST00000437679 BACE2Q9Y5Z0 518 aa16.49■□□□□ 0.23
LIMS3-201ENST00000437679 ANK1P16157 1881 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 CCDC195A0A1B0GUA6 201 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 PI4K2BG5E9Z4 385 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 H7C4K7 107 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 TULP1O00294 542 aaPredicted RBP16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms