RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 TYK2P29597 1187 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 CCNA1P78396 465 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 MCL1Q07820 350 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 DMC1Q14565 340 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 IMPG1Q17R60 797 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 UGT3A1Q6NUS8 523 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 SGMS1Q86VZ5 419 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 NLRP10Q86W26 655 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 LRRC6Q86X45 466 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 GAS2L3Q86XJ1 694 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 RNPC3Q96LT9 517 aaKnown RBP7.53□□□□□ -1.2
VPS53-204ENST00000437048 RSAD1Q9HA92 442 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 KLHL3Q9UH77 587 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 GGA1Q9UJY5 639 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 UBAP1LF5GYI3 381 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 NPR3P17342 541 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 PTK6Q13882 451 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 AARS2Q5JTZ9 985 aaKnown RBP7.53□□□□□ -1.2
VPS53-204ENST00000437048 ERO1BQ86YB8 467 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 STKLD1Q8NE28 680 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 PLEKHA8Q96JA3 519 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 NEK6Q9HC98 313 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 ADGRF5Q8IZF2 1346 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 ADAMTS12P58397 1594 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 PSTPIP1O43586 416 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 ENPEPQ07075 957 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 NEK5Q6P3R8 708 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 WDR36Q8NI36 951 aaKnown RBP7.53□□□□□ -1.2
VPS53-204ENST00000437048 MRRFQ96E11 262 aaKnown RBP7.53□□□□□ -1.2
VPS53-204ENST00000437048 GPAMQ9HCL2 828 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 SETBP1Q9Y6X0 1596 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 IDH3BO43837 385 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 PALMO75781 387 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 VIL1P09327 827 aaKnown RBP7.53□□□□□ -1.2
VPS53-204ENST00000437048 RGS4P49798 205 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 ROR1Q01973 937 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 TRIP4Q15650 581 aaPredicted RBP7.53□□□□□ -1.2
VPS53-204ENST00000437048 DPH6Q7L8W6 267 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 FBXO11Q86XK2 927 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 TMPRSS6Q8IU80 811 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 C9orf16Q9BUW7 83 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 PLGRKTQ9HBL7 147 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 KIAA1024Q9UPX6 916 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 H3BQF6 201 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 SRP72O76094 671 aaKnown RBP7.53□□□□□ -1.2
VPS53-204ENST00000437048 SCRN1Q12765 414 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 PIK3R5Q8WYR1 880 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 HAVCR1Q96D42 359 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 STK39Q9UEW8 545 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 NIP7Q9Y221 180 aaKnown RBP eCLIP7.53□□□□□ -1.2
VPS53-204ENST00000437048 GMFBP60983 142 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 C2orf54Q08AI8 447 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 MAD2L1Q13257 205 aaPredicted RBP7.53□□□□□ -1.2
VPS53-204ENST00000437048 VCPIP1Q96JH7 1222 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 DCLK3Q9C098 648 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 CFLARO15519 480 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 PCCAP05165 728 aaPredicted RBP7.53□□□□□ -1.2
VPS53-204ENST00000437048 XRCC4Q13426 336 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 PMF1Q6P1K2 205 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 SKA1Q96BD8 255 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 NCAM2O15394 837 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 ITGA6P23229 1130 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 SCTRP47872 440 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 RAD51Q06609 339 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 TRIP13Q15645 432 aaPredicted RBP7.53□□□□□ -1.2
VPS53-204ENST00000437048 XRRA1Q6P2D8 792 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 CDH24Q86UP0 819 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 RDH13Q8NBN7 331 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 DIS3LQ8TF46 1054 aaKnown RBP7.53□□□□□ -1.2
VPS53-204ENST00000437048 TMEM237Q96Q45 408 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 FHDC1Q9C0D6 1143 aaPredicted RBP7.53□□□□□ -1.2
VPS53-204ENST00000437048 IL6P05231 212 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 ZNF200P98182 395 aaPredicted RBP7.53□□□□□ -1.2
VPS53-204ENST00000437048 PDCD6IPQ8WUM4 868 aaKnown RBP7.53□□□□□ -1.2
VPS53-204ENST00000437048 ZWILCHQ9H900 591 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 IARS2Q9NSE4 1012 aaKnown RBP7.53□□□□□ -1.2
VPS53-204ENST00000437048 SEC31AO94979 1220 aaKnown RBP7.52□□□□□ -1.2
VPS53-204ENST00000437048 DMPKQ09013 629 aa7.52□□□□□ -1.2
VPS53-204ENST00000437048 MDH1BQ5I0G3 518 aa7.52□□□□□ -1.2
VPS53-204ENST00000437048 ARMC4Q5T2S8 1044 aa7.52□□□□□ -1.2
VPS53-204ENST00000437048 BSPRYQ5W0U4 402 aa7.52□□□□□ -1.2
VPS53-204ENST00000437048 SPDYE1Q8NFV5 336 aaPredicted RBP7.52□□□□□ -1.2
VPS53-204ENST00000437048 KBTBD8Q8NFY9 601 aa7.52□□□□□ -1.2
VPS53-204ENST00000437048 IL17RAQ96F46 866 aa7.52□□□□□ -1.2
VPS53-204ENST00000437048 OTUD5Q96G74 571 aa7.52□□□□□ -1.2
VPS53-204ENST00000437048 CCDC59Q9P031 241 aaKnown RBP7.52□□□□□ -1.2
VPS53-204ENST00000437048 MYRFQ9Y2G1 1151 aa7.52□□□□□ -1.2
VPS53-204ENST00000437048 DTNAQ9Y4J8 743 aa7.52□□□□□ -1.2
VPS53-204ENST00000437048 PPME1Q9Y570 386 aa7.52□□□□□ -1.2
VPS53-204ENST00000437048 ZC3H11AO75152 810 aaKnown RBP eCLIP7.52□□□□□ -1.21
VPS53-204ENST00000437048 PECAM1P16284 738 aaPredicted RBP7.52□□□□□ -1.21
VPS53-204ENST00000437048 PSMA2P25787 234 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 FDFT1P37268 417 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 SPIDRQ14159 915 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 RSRC2Q7L4I2 434 aaKnown RBP7.52□□□□□ -1.21
VPS53-204ENST00000437048 RPAP3Q9H6T3 665 aaPredicted RBP7.52□□□□□ -1.21
VPS53-204ENST00000437048 NCOA3Q9Y6Q9 1424 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 LDOC1O95751 146 aaPredicted RBP7.52□□□□□ -1.21
VPS53-204ENST00000437048 ZNF662Q6ZS27 426 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 TRIM39Q9HCM9 518 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms