RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 HECW1Q76N89 1606 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ABCA10Q8WWZ4 1543 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ABCC4O15439 1325 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 USP12O75317 370 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 MAFO75444 373 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 RFPL3O75679 317 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 RECQL4O94761 1208 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 VIL1P09327 827 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 SLC35E2P0CK97 266 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 AGXTP21549 392 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ITPKBP27987 946 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 MSX1P28360 303 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 CCND2P30279 289 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 PCGF2P35227 344 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 SLC19A1P41440 591 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 AARSP49588 968 aaKnown RBP eCLIP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 BLKP51451 505 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 USP41Q3LFD5 358 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 CATSPEREQ5SY80 951 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 C10orf62Q5T681 223 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 KIAA1614Q5VZ46 1190 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 TMEM207Q6UWW9 146 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 GIGYF2Q6Y7W6 1299 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 TECPR1Q7Z6L1 1165 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 CCDC84Q86UT8 332 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ZCCHC9Q8N567 271 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 CLEC1AQ8NC01 280 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 CNNM3Q8NE01 707 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 GMCL1P1Q8NEA9 526 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 RNF139Q8WU17 664 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 APOBEC4Q8WW27 367 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 FRAT1Q92837 279 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 HSPA12BQ96MM6 686 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 TRERF1Q96PN7 1200 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 MTRQ99707 1265 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 NCAPGQ9BPX3 1015 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 CLSTN2Q9H4D0 955 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 EP400Q96L91 3159 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 ZMYM4Q5VZL5 1548 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 DUOX2Q9NRD8 1548 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 PLK4O00444 970 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 ZNF213O14771 459 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 ENTPD3O75355 529 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 JTBO76095 146 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 ITGA3P26006 1051 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 ADRA1BP35368 520 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 SREBF1P36956 1147 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 RABIFP47224 123 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 MEOX1P50221 254 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 STAT2P52630 851 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 TAP1Q03518 808 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 AP1B1Q10567 949 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 TTF1Q15361 905 aaPredicted RBP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 SF3B4Q15427 424 aaKnown RBP eCLIP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 TKFCQ3LXA3 575 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 TDRD12Q587J7 1177 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 DNAJC21Q5F1R6 531 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 DMRTC1Q5HYR2 192 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 TTC39BQ5VTQ0 682 aaPredicted RBP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 SLFN13Q68D06 897 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 ARMCX2Q7L311 632 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 LYSMD3Q7Z3D4 306 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 FAM83AQ86UY5 434 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 TAX1BP1Q86VP1 789 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 PROSER1Q86XN7 944 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 GSPT2Q8IYD1 628 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 LRRC47Q8N1G4 583 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 LIX1Q8N485 282 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 PRSS33Q8NF86 280 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 MTMR8Q96EF0 704 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 NLRP4Q96MN2 994 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 SLITRK1Q96PX8 696 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 TMEM209Q96SK2 561 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 ZPBPQ9BS86 351 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 PRRG4Q9BZD6 226 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 VTA1Q9NP79 307 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 AATFQ9NY61 560 aaKnown RBP eCLIP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 PCDHB8Q9UN66 801 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 CYP8B1Q9UNU6 501 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 TIMM13Q9Y5L4 95 aaPredicted RBP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 MAP3K19Q56UN5 1328 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 SEC16AO15027 2179 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 KIF14Q15058 1648 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 ROBO1Q9Y6N7 1651 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 MAGEB6P1A0A0J9YX57 407 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 SLC35F4A4IF30 521 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 USO1O60763 962 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 LSP1P33241 339 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 GYG1P46976 350 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 FBXL19Q6PCT2 694 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 GFRALQ6UXV0 394 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 ASB18Q6ZVZ8 466 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 NPAS4Q8IUM7 802 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 MCEMP1Q8IX19 187 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 SLC34A3Q8N130 599 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 TRIML1Q8N9V2 468 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 LSM14AQ8ND56 463 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 CCDC12Q8WUD4 166 aaPredicted RBP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 KCTD4Q8WVF5 259 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 EXTL1Q92935 676 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms