RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 ZBTB41Q5SVQ8 909 aa18.13■□□□□ 0.49
PTPRK-208ENST00000392449 PARM1Q6UWI2 310 aa18.13■□□□□ 0.49
PTPRK-208ENST00000392449 GPBP1Q86WP2 473 aa18.13■□□□□ 0.49
PTPRK-208ENST00000392449 GPR152Q8TDT2 470 aa18.13■□□□□ 0.49
PTPRK-208ENST00000392449 ING5Q8WYH8 240 aa18.13■□□□□ 0.49
PTPRK-208ENST00000392449 FGF13Q92913 245 aa18.13■□□□□ 0.49
PTPRK-208ENST00000392449 BLOC1S4Q9NUP1 217 aa18.13■□□□□ 0.49
PTPRK-208ENST00000392449 SLC38A7Q9NVC3 462 aa18.13■□□□□ 0.49
PTPRK-208ENST00000392449 ZFHX2Q9C0A1 2572 aaPredicted RBP18.12■□□□□ 0.49
PTPRK-208ENST00000392449 TRAPPC3O43617 180 aa18.12■□□□□ 0.49
PTPRK-208ENST00000392449 SRFP11831 508 aa18.12■□□□□ 0.49
PTPRK-208ENST00000392449 PLCG1P19174 1290 aa18.12■□□□□ 0.49
PTPRK-208ENST00000392449 MATR3P43243 847 aaKnown RBP eCLIP18.12■□□□□ 0.491e-6■■■□□ 16.9
PTPRK-208ENST00000392449 MCM2P49736 904 aa18.12■□□□□ 0.49
PTPRK-208ENST00000392449 SMTNP53814 917 aa18.12■□□□□ 0.49
PTPRK-208ENST00000392449 ROR1Q01973 937 aa18.12■□□□□ 0.49
PTPRK-208ENST00000392449 MCM6Q14566 821 aa18.12■□□□□ 0.49
PTPRK-208ENST00000392449 ANKS3Q6ZW76 656 aa18.12■□□□□ 0.49
PTPRK-208ENST00000392449 BICD1Q96G01 975 aa18.12■□□□□ 0.49
PTPRK-208ENST00000392449 DNMT3BQ9UBC3 853 aaKnown RBP18.12■□□□□ 0.49
PTPRK-208ENST00000392449 CDH7Q9ULB5 785 aa18.12■□□□□ 0.49
PTPRK-208ENST00000392449 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.12■□□□□ 0.49
PTPRK-208ENST00000392449 BACE2Q9Y5Z0 518 aa18.12■□□□□ 0.49
PTPRK-208ENST00000392449 CFAP54Q96N23 3096 aa18.12■□□□□ 0.49
PTPRK-208ENST00000392449 WDR27A2RRH5 827 aa18.11■□□□□ 0.49
PTPRK-208ENST00000392449 VPS37CA5D8V6 355 aaPredicted RBP18.11■□□□□ 0.49
PTPRK-208ENST00000392449 STK25O00506 426 aa18.11■□□□□ 0.49
PTPRK-208ENST00000392449 XYLBO75191 536 aa18.11■□□□□ 0.49
PTPRK-208ENST00000392449 HOXA9P31269 272 aa18.11■□□□□ 0.49
PTPRK-208ENST00000392449 UBA7P41226 1012 aa18.11■□□□□ 0.49
PTPRK-208ENST00000392449 NCKAP1LP55160 1127 aa18.11■□□□□ 0.49
PTPRK-208ENST00000392449 MCL1Q07820 350 aa18.11■□□□□ 0.49
PTPRK-208ENST00000392449 SF3A1Q15459 793 aaKnown RBP18.11■□□□□ 0.49
PTPRK-208ENST00000392449 HAUS6Q7Z4H7 955 aa18.11■□□□□ 0.49
PTPRK-208ENST00000392449 WNT16Q9UBV4 365 aa18.11■□□□□ 0.49
PTPRK-208ENST00000392449 NUB1Q9Y5A7 615 aa18.11■□□□□ 0.49
PTPRK-208ENST00000392449 CLDN3O15551 220 aa18.1■□□□□ 0.49
PTPRK-208ENST00000392449 MCM4P33991 863 aa18.1■□□□□ 0.49
PTPRK-208ENST00000392449 GUCY2FP51841 1108 aa18.1■□□□□ 0.49
PTPRK-208ENST00000392449 NUBP1P53384 320 aa18.1■□□□□ 0.49
PTPRK-208ENST00000392449 SLC5A9Q2M3M2 681 aa18.1■□□□□ 0.49
PTPRK-208ENST00000392449 SPECC1Q5M775 1068 aa18.1■□□□□ 0.49
PTPRK-208ENST00000392449 POTEHQ6S545 545 aa18.1■□□□□ 0.49
PTPRK-208ENST00000392449 ZPBP2Q6X784 338 aa18.1■□□□□ 0.49
PTPRK-208ENST00000392449 AK8Q96MA6 479 aa18.1■□□□□ 0.49
PTPRK-208ENST00000392449 TBC1D17Q9HA65 648 aa18.1■□□□□ 0.49
PTPRK-208ENST00000392449 KCND2Q9NZV8 630 aa18.1■□□□□ 0.49
PTPRK-208ENST00000392449 LARSQ9P2J5 1176 aaKnown RBP18.1■□□□□ 0.49
PTPRK-208ENST00000392449 K7ENM7 598 aa18.09■□□□□ 0.49
PTPRK-208ENST00000392449 TBC1D4O60343 1298 aa18.09■□□□□ 0.49
PTPRK-208ENST00000392449 GFRA3O60609 400 aa18.09■□□□□ 0.49
PTPRK-208ENST00000392449 SEC24AO95486 1093 aa18.09■□□□□ 0.49
PTPRK-208ENST00000392449 PABPC1LQ4VXU2 614 aaKnown RBP18.09■□□□□ 0.49
PTPRK-208ENST00000392449 SLC8B1Q6J4K2 584 aa18.09■□□□□ 0.49
PTPRK-208ENST00000392449 FAM173BQ6P4H8 233 aa18.09■□□□□ 0.49
PTPRK-208ENST00000392449 USP49Q70CQ1 688 aa18.09■□□□□ 0.49
PTPRK-208ENST00000392449 NPAS3Q8IXF0 933 aa18.09■□□□□ 0.49
PTPRK-208ENST00000392449 MYCT1Q8N699 235 aa18.09■□□□□ 0.49
PTPRK-208ENST00000392449 RASSF8Q8NHQ8 419 aa18.09■□□□□ 0.49
PTPRK-208ENST00000392449 RAD54LQ92698 747 aa18.09■□□□□ 0.49
PTPRK-208ENST00000392449 NXPE3Q969Y0 559 aa18.09■□□□□ 0.49
PTPRK-208ENST00000392449 CALML4Q96GE6 196 aa18.09■□□□□ 0.49
PTPRK-208ENST00000392449 KXD1Q9BQD3 176 aa18.09■□□□□ 0.49
PTPRK-208ENST00000392449 ZHX3Q9H4I2 956 aa18.09■□□□□ 0.49
PTPRK-208ENST00000392449 FBXL5Q9UKA1 691 aa18.09■□□□□ 0.49
PTPRK-208ENST00000392449 CLIC4Q9Y696 253 aa18.09■□□□□ 0.49
PTPRK-208ENST00000392449 NRG2O14511 850 aaPredicted RBP18.08■□□□□ 0.49
PTPRK-208ENST00000392449 FAM13AO94988 1023 aa18.08■□□□□ 0.49
PTPRK-208ENST00000392449 RPL9P32969 192 aaKnown RBP18.08■□□□□ 0.49
PTPRK-208ENST00000392449 LIG4P49917 911 aa18.08■□□□□ 0.49
PTPRK-208ENST00000392449 GPC5P78333 572 aa18.08■□□□□ 0.49
PTPRK-208ENST00000392449 UVSSAQ2YD98 709 aa18.08■□□□□ 0.49
PTPRK-208ENST00000392449 BRAPQ7Z569 592 aa18.08■□□□□ 0.49
PTPRK-208ENST00000392449 CCDC105Q8IYK2 499 aa18.08■□□□□ 0.49
PTPRK-208ENST00000392449 KCTD17Q8N5Z5 321 aa18.08■□□□□ 0.49
PTPRK-208ENST00000392449 ZNF461Q8TAF7 563 aa18.08■□□□□ 0.49
PTPRK-208ENST00000392449 KIF12Q96FN5 646 aa18.08■□□□□ 0.49
PTPRK-208ENST00000392449 SUSD3Q96L08 255 aa18.08■□□□□ 0.49
PTPRK-208ENST00000392449 ARHGEF3Q9NR81 526 aa18.08■□□□□ 0.49
PTPRK-208ENST00000392449 ODF2LQ9ULJ1 636 aa18.08■□□□□ 0.49
PTPRK-208ENST00000392449 TBX20Q9UMR3 447 aa18.08■□□□□ 0.49
PTPRK-208ENST00000392449 TIMM13Q9Y5L4 95 aaPredicted RBP18.08■□□□□ 0.49
PTPRK-208ENST00000392449 TTC26A0AVF1 554 aa18.07■□□□□ 0.48
PTPRK-208ENST00000392449 LACTBL1A8MY62 500 aa18.07■□□□□ 0.48
PTPRK-208ENST00000392449 TISP43B9A030 160 aa18.07■□□□□ 0.48
PTPRK-208ENST00000392449 PRRG1O14668 218 aa18.07■□□□□ 0.48
PTPRK-208ENST00000392449 HNRNPDLO14979 420 aaKnown RBP18.07■□□□□ 0.48
PTPRK-208ENST00000392449 SYN3O14994 580 aa18.07■□□□□ 0.48
PTPRK-208ENST00000392449 FAM189A1O60320 539 aa18.07■□□□□ 0.48
PTPRK-208ENST00000392449 ABLIM3O94929 683 aa18.07■□□□□ 0.48
PTPRK-208ENST00000392449 DCNP07585 359 aaKnown RBP18.07■□□□□ 0.48
PTPRK-208ENST00000392449 RHOP08100 348 aa18.07■□□□□ 0.48
PTPRK-208ENST00000392449 RFX1P22670 979 aa18.07■□□□□ 0.48
PTPRK-208ENST00000392449 NMT1P30419 496 aaKnown RBP18.07■□□□□ 0.48
PTPRK-208ENST00000392449 CUL4AQ13619 759 aa18.07■□□□□ 0.48
PTPRK-208ENST00000392449 MRPL58Q14197 206 aaKnown RBP18.07■□□□□ 0.48
PTPRK-208ENST00000392449 ENOX2Q16206 610 aaKnown RBP18.07■□□□□ 0.48
PTPRK-208ENST00000392449 CTXN3Q4LDR2 81 aa18.07■□□□□ 0.48
PTPRK-208ENST00000392449 SLC39A4Q6P5W5 647 aa18.07■□□□□ 0.48
PTPRK-208ENST00000392449 ASCL5Q7RTU5 278 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms