RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 CENPCQ03188 943 aa23.26■■□□□ 1.31
SHMT1-202ENST00000352886 SLC29A2Q14542 456 aa23.26■■□□□ 1.31
SHMT1-202ENST00000352886 SLFN12LQ6IEE8 588 aa23.26■■□□□ 1.31
SHMT1-202ENST00000352886 C1orf54Q8WWF1 131 aa23.26■■□□□ 1.31
SHMT1-202ENST00000352886 TRIM11Q96F44 468 aa23.26■■□□□ 1.31
SHMT1-202ENST00000352886 MSTO1Q9BUK6 570 aa23.26■■□□□ 1.31
SHMT1-202ENST00000352886 SEMA4AQ9H3S1 761 aa23.26■■□□□ 1.31
SHMT1-202ENST00000352886 APOBEC3GQ9HC16 384 aaKnown RBP23.26■■□□□ 1.31
SHMT1-202ENST00000352886 FBXO40Q9UH90 709 aa23.26■■□□□ 1.31
SHMT1-202ENST00000352886 FAM107AO95990 144 aa23.25■■□□□ 1.31
SHMT1-202ENST00000352886 PIGRP01833 764 aa23.25■■□□□ 1.31
SHMT1-202ENST00000352886 CYP1A1P04798 512 aaPredicted RBP23.25■■□□□ 1.31
SHMT1-202ENST00000352886 CUL2Q13617 745 aa23.25■■□□□ 1.31
SHMT1-202ENST00000352886 PPP1R7Q15435 360 aa23.25■■□□□ 1.31
SHMT1-202ENST00000352886 SGO2Q562F6 1265 aa23.25■■□□□ 1.31
SHMT1-202ENST00000352886 TLCD1Q96CP7 247 aa23.25■■□□□ 1.31
SHMT1-202ENST00000352886 POLR2AP24928 1970 aaKnown RBP23.25■■□□□ 1.31
SHMT1-202ENST00000352886 ACO1P21399 889 aaKnown RBP23.25■■□□□ 1.31
SHMT1-202ENST00000352886 MKRN4PQ13434 485 aaPredicted RBP23.25■■□□□ 1.31
SHMT1-202ENST00000352886 CHST13Q8NET6 341 aa23.25■■□□□ 1.31
SHMT1-202ENST00000352886 ART4Q93070 314 aa23.25■■□□□ 1.31
SHMT1-202ENST00000352886 EDN1P05305 212 aa23.24■■□□□ 1.31
SHMT1-202ENST00000352886 CFHP08603 1231 aa23.24■■□□□ 1.31
SHMT1-202ENST00000352886 UBAP2Q5T6F2 1119 aaKnown RBP23.24■■□□□ 1.31
SHMT1-202ENST00000352886 TMEM270Q6UE05 265 aa23.24■■□□□ 1.31
SHMT1-202ENST00000352886 MON1BQ7L1V2 547 aa23.24■■□□□ 1.31
SHMT1-202ENST00000352886 PASD1Q8IV76 773 aa23.24■■□□□ 1.31
SHMT1-202ENST00000352886 KCNN1Q92952 543 aa23.24■■□□□ 1.31
SHMT1-202ENST00000352886 CEP89Q96ST8 783 aa23.24■■□□□ 1.31
SHMT1-202ENST00000352886 MAF1Q9H063 256 aa23.24■■□□□ 1.31
SHMT1-202ENST00000352886 PCDHB4Q9Y5E5 795 aa23.24■■□□□ 1.31
SHMT1-202ENST00000352886 LDHAP00338 332 aaKnown RBP23.24■■□□□ 1.31
SHMT1-202ENST00000352886 FGFR4P22455 802 aa23.24■■□□□ 1.31
SHMT1-202ENST00000352886 SLC1A1P43005 524 aa23.24■■□□□ 1.31
SHMT1-202ENST00000352886 ALDH5A1P51649 535 aaPredicted RBP23.24■■□□□ 1.31
SHMT1-202ENST00000352886 SNX1Q13596 522 aa23.24■■□□□ 1.31
SHMT1-202ENST00000352886 NOL9Q5SY16 702 aaKnown RBP23.24■■□□□ 1.31
SHMT1-202ENST00000352886 NIFKQ9BYG3 293 aaKnown RBP23.24■■□□□ 1.31
SHMT1-202ENST00000352886 A0A0B4J269 797 aa23.23■■□□□ 1.31
SHMT1-202ENST00000352886 UBA1P22314 1058 aaKnown RBP23.23■■□□□ 1.31
SHMT1-202ENST00000352886 SSTR3P32745 418 aaPredicted RBP23.23■■□□□ 1.31
SHMT1-202ENST00000352886 SEZ6Q53EL9 994 aa23.23■■□□□ 1.31
SHMT1-202ENST00000352886 DAB2IPQ5VWQ8 1189 aa23.23■■□□□ 1.31
SHMT1-202ENST00000352886 PPM1EQ8WY54 764 aa23.23■■□□□ 1.31
SHMT1-202ENST00000352886 C11orf70Q9BRQ4 267 aa23.23■■□□□ 1.31
SHMT1-202ENST00000352886 A0A087WUV0 522 aaPredicted RBP23.23■■□□□ 1.31
SHMT1-202ENST00000352886 IGKV6D-21A0A0A0MT36 114 aa23.23■■□□□ 1.31
SHMT1-202ENST00000352886 TLDC2A0PJX2 215 aa23.23■■□□□ 1.31
SHMT1-202ENST00000352886 TRAPPC3O43617 180 aa23.23■■□□□ 1.31
SHMT1-202ENST00000352886 GNA15P30679 374 aa23.23■■□□□ 1.31
SHMT1-202ENST00000352886 KRT17Q04695 432 aa23.23■■□□□ 1.31
SHMT1-202ENST00000352886 SBDSQ9Y3A5 250 aaKnown RBP eCLIP23.23■■□□□ 1.31
SHMT1-202ENST00000352886 GMNCA6NCL1 334 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 HARSP12081 509 aaKnown RBP23.22■■□□□ 1.31
SHMT1-202ENST00000352886 CALCOCO2Q13137 446 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 BYSLQ13895 437 aaKnown RBP23.22■■□□□ 1.31
SHMT1-202ENST00000352886 SLMAPQ14BN4 828 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 TREML2Q5T2D2 321 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 TADA2BQ86TJ2 420 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 SPATS2Q86XZ4 545 aaKnown RBP23.22■■□□□ 1.31
SHMT1-202ENST00000352886 OR5B17Q8NGF7 314 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.22■■□□□ 1.31
SHMT1-202ENST00000352886 UHMK1Q8TAS1 419 aaKnown RBP23.22■■□□□ 1.31
SHMT1-202ENST00000352886 SLCO2A1Q92959 643 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 PCYT2Q99447 389 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 CGRRF1Q99675 332 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 CHST7Q9NS84 486 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 GSTTP1A0A1W2PQM5 241 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 SMIM23A6NLE4 172 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 FARP2O94887 1054 aaPredicted RBP23.22■■□□□ 1.31
SHMT1-202ENST00000352886 NOMO3P69849 1222 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 NOP14P78316 857 aaKnown RBP23.22■■□□□ 1.31
SHMT1-202ENST00000352886 CAPSQ13938 189 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 SH3D19Q5HYK7 790 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 ATG4AQ8WYN0 398 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 PGM2Q96G03 612 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 HERPUD2Q9BSE4 406 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 PAGR1Q9BTK6 254 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 NUB1Q9Y5A7 615 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 UMODL1Q5DID0 1318 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 ADGRA2Q96PE1 1338 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 PTPRFP10586 1907 aa23.22■■□□□ 1.31
SHMT1-202ENST00000352886 CLTAP09496 248 aa23.21■■□□□ 1.31
SHMT1-202ENST00000352886 RARGP13631 454 aa23.21■■□□□ 1.31
SHMT1-202ENST00000352886 CCDC25Q86WR0 208 aa23.21■■□□□ 1.31
SHMT1-202ENST00000352886 ABRAQ8N0Z2 381 aa23.21■■□□□ 1.31
SHMT1-202ENST00000352886 DDX27Q96GQ7 796 aaKnown RBP23.21■■□□□ 1.31
SHMT1-202ENST00000352886 MTFR1LQ9H019 292 aa23.21■■□□□ 1.31
SHMT1-202ENST00000352886 ADAM22Q9P0K1 906 aa23.21■■□□□ 1.31
SHMT1-202ENST00000352886 CNTNAP2Q9UHC6 1331 aa23.21■■□□□ 1.31
SHMT1-202ENST00000352886 RIPK2O43353 540 aa23.21■■□□□ 1.31
SHMT1-202ENST00000352886 PAEPP09466 180 aa23.21■■□□□ 1.31
SHMT1-202ENST00000352886 RFC5P40937 340 aa23.21■■□□□ 1.31
SHMT1-202ENST00000352886 LIN9Q5TKA1 542 aa23.21■■□□□ 1.31
SHMT1-202ENST00000352886 LBX2Q6XYB7 198 aa23.21■■□□□ 1.31
SHMT1-202ENST00000352886 RBBP8NLQ8NC74 664 aaPredicted RBP23.21■■□□□ 1.31
SHMT1-202ENST00000352886 RAPGEF5Q92565 580 aa23.21■■□□□ 1.31
SHMT1-202ENST00000352886 CNOT10Q9H9A5 744 aaKnown RBP23.21■■□□□ 1.31
SHMT1-202ENST00000352886 GPRC5DQ9NZD1 345 aa23.21■■□□□ 1.31
SHMT1-202ENST00000352886 PROSCO94903 275 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms