RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 PNMA3Q9UL41 463 aa13.15□□□□□ -0.3
SNRNP48-201ENST00000342415 HLA-DRAP01903 254 aa13.15□□□□□ -0.3
SNRNP48-201ENST00000342415 CAV1Q03135 178 aa13.15□□□□□ -0.3
SNRNP48-201ENST00000342415 C1orf146Q5VVC0 180 aa13.15□□□□□ -0.3
SNRNP48-201ENST00000342415 EP400NLQ6ZTU2 488 aa13.15□□□□□ -0.3
SNRNP48-201ENST00000342415 PIP4K2CQ8TBX8 421 aa13.15□□□□□ -0.3
SNRNP48-201ENST00000342415 TARS2Q9BW92 718 aaKnown RBP13.15□□□□□ -0.3
SNRNP48-201ENST00000342415 STOML1Q9UBI4 398 aa13.15□□□□□ -0.3
SNRNP48-201ENST00000342415 PHTF1Q9UMS5 762 aa13.15□□□□□ -0.3
SNRNP48-201ENST00000342415 ASTN1O14525 1302 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 TCRBV7S2A1N4TA0A589 114 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 PRPSAP2O60256 369 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 ZSCAN5DPP0CG00 497 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 ANXA13P27216 316 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 NOP9Q86U38 636 aaKnown RBP13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 TRIM50Q86XT4 487 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 PRELID2Q8N945 189 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 SCYL1Q96KG9 808 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 NRBP2Q9NSY0 501 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 HESX1Q9UBX0 185 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 PCDHA10Q9Y5I2 948 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 IQANK1A0A1B0GTG1 560 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 POLRMTO00411 1230 aaKnown RBP13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 MEIS2O14770 477 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 ALDH5A1P51649 535 aaPredicted RBP13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 RBBP5Q15291 538 aaKnown RBP13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 MAP7D3Q8IWC1 876 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 RBBP8NLQ8NC74 664 aaPredicted RBP13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 TMEM121Q9BTD3 319 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 OSBPL7Q9BZF2 842 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 IGSF9BQ9UPX0 1349 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 H0YCG3 227 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 NFIBO00712 420 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 KIAA0391O15091 583 aaKnown RBP13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 RFX1P22670 979 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 CCDC14Q49A88 953 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 SV2AQ7L0J3 742 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 ARMC2Q8NEN0 867 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 TAAR1Q96RJ0 339 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 MXRA8Q9BRK3 442 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 DNAJC18Q9H819 358 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 ATP6V0A4Q9HBG4 840 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 GRIN2DO15399 1336 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 UBE4BO95155 1302 aa13.14□□□□□ -0.31
SNRNP48-201ENST00000342415 CST8O60676 142 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 UPP2O95045 317 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 ATXN3P54252 364 aaPredicted RBP13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 ALDH18A1P54886 795 aaKnown RBP13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 ARHGAP27Q6ZUM4 889 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 DNAAF3Q8N9W5 541 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 GSDMBQ8TAX9 411 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 MPHOSPH6Q99547 160 aaKnown RBP13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 MYH8P13535 1937 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 A6NJR5 290 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 SHOX2O60902 331 aaPredicted RBP13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 TTC4O95801 387 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 APRTP07741 180 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 CDH6P55285 790 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 ELF3P78545 371 aaPredicted RBP13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 ZNF699Q32M78 642 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 WDR72Q3MJ13 1102 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 MIS18BP1Q6P0N0 1132 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 OTOP1Q7RTM1 612 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 MCPH1Q8NEM0 835 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 GJD4Q96KN9 370 aaPredicted RBP13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 PCDHB2Q9Y5E7 798 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 AFDNP55196 1824 aaKnown RBP13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 TGFB1I1O43294 461 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 CBX6O95503 412 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 CCND2P30279 289 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 ACAD10Q6JQN1 1059 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 RAPH1Q70E73 1250 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 ATP11CQ8NB49 1132 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 MORC4Q8TE76 937 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 AGAP11Q8TF27 550 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 ANKRD36BP1Q96IX9 119 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 ROPN1BQ9BZX4 212 aaPredicted RBP13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 MIS12Q9H081 205 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 KDM4CQ9H3R0 1056 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 ROPN1Q9HAT0 212 aaPredicted RBP13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 GEMIN8Q9NWZ8 242 aaKnown RBP13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 DLGAP2Q9P1A6 1054 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 KRT37O76014 449 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 STK10O94804 968 aaKnown RBP13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 SPATA31C1P0DKV0 1188 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 CREB1P16220 341 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 DRD4P21917 467 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 CCND1P24385 295 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 PGM1P36871 562 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 RPS6P62753 249 aaKnown RBP13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 COG7P83436 770 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 ATP13A4Q4VNC1 1196 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 ERMARDQ5T6L9 678 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 RC3H1Q5TC82 1133 aaKnown RBP13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 CPNE8Q86YQ8 564 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 ADPGKQ9BRR6 497 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 PARVAQ9NVD7 372 aa13.13□□□□□ -0.31
SNRNP48-201ENST00000342415 A0A0A6YYK5 440 aaPredicted RBP13.12□□□□□ -0.31
SNRNP48-201ENST00000342415 CCDC78A2IDD5 438 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms