RNA–Protein interactions for RNA: ENST00000334895.9

TPM1-204, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,637 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-204ENST00000334895 FBXL13Q8NEE6 735 aa23.22■■□□□ 1.31
TPM1-204ENST00000334895 INTS2Q9H0H0 1204 aaKnown RBP23.22■■□□□ 1.31
TPM1-204ENST00000334895 UBN1Q9NPG3 1134 aa23.22■■□□□ 1.31
TPM1-204ENST00000334895 ITIH6Q6UXX5 1313 aa23.22■■□□□ 1.31
TPM1-204ENST00000334895 ABHD14A-ACY1A0A1B0GW23 586 aa23.22■■□□□ 1.31
TPM1-204ENST00000334895 CST3P01034 146 aaPredicted RBP23.22■■□□□ 1.31
TPM1-204ENST00000334895 HLA-DRAP01903 254 aa23.22■■□□□ 1.31
TPM1-204ENST00000334895 TNNC2P02585 160 aa23.22■■□□□ 1.31
TPM1-204ENST00000334895 PPIGQ13427 754 aaKnown RBP eCLIP23.22■■□□□ 1.312e-10■■□□□ 11.9
TPM1-204ENST00000334895 TRIM65Q6PJ69 517 aa23.22■■□□□ 1.31
TPM1-204ENST00000334895 EHBP1Q8NDI1 1231 aa23.22■■□□□ 1.31
TPM1-204ENST00000334895 TSPAN18Q96SJ8 248 aa23.22■■□□□ 1.31
TPM1-204ENST00000334895 LBHD1Q9BQE6 289 aaPredicted RBP23.22■■□□□ 1.31
TPM1-204ENST00000334895 LSM14BQ9BX40 385 aaKnown RBP23.22■■□□□ 1.31
TPM1-204ENST00000334895 TDRD15B5MCY1 1934 aaKnown RBP23.21■■□□□ 1.31
TPM1-204ENST00000334895 NOL4O94818 638 aa23.21■■□□□ 1.31
TPM1-204ENST00000334895 SPC24Q8NBT2 197 aa23.21■■□□□ 1.31
TPM1-204ENST00000334895 HELQQ8TDG4 1101 aa23.21■■□□□ 1.31
TPM1-204ENST00000334895 CACTINQ8WUQ7 758 aaKnown RBP23.21■■□□□ 1.31
TPM1-204ENST00000334895 ANP32BQ92688 251 aaKnown RBP23.21■■□□□ 1.31
TPM1-204ENST00000334895 ELMO3Q96BJ8 720 aa23.21■■□□□ 1.31
TPM1-204ENST00000334895 RPS6KC1Q96S38 1066 aa23.21■■□□□ 1.31
TPM1-204ENST00000334895 FAM207AQ9NSI2 230 aaPredicted RBP23.21■■□□□ 1.31
TPM1-204ENST00000334895 RAB20Q9NX57 234 aa23.21■■□□□ 1.31
TPM1-204ENST00000334895 DPP3Q9NY33 737 aa23.21■■□□□ 1.31
TPM1-204ENST00000334895 UBQLN1Q9UMX0 589 aaKnown RBP23.21■■□□□ 1.31
TPM1-204ENST00000334895 PTPRSQ13332 1948 aa23.2■■□□□ 1.31
TPM1-204ENST00000334895 PIK3CAP42336 1068 aa23.2■■□□□ 1.3
TPM1-204ENST00000334895 CETN1Q12798 172 aa23.2■■□□□ 1.3
TPM1-204ENST00000334895 TBX2Q13207 712 aaPredicted RBP23.2■■□□□ 1.3
TPM1-204ENST00000334895 NCOA4Q13772 614 aa23.2■■□□□ 1.3
TPM1-204ENST00000334895 PCMTD1Q96MG8 357 aaPredicted RBP23.2■■□□□ 1.3
TPM1-204ENST00000334895 PI4K2AQ9BTU6 479 aa23.2■■□□□ 1.3
TPM1-204ENST00000334895 TTYH3Q9C0H2 523 aa23.2■■□□□ 1.3
TPM1-204ENST00000334895 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.2■■□□□ 1.3
TPM1-204ENST00000334895 INPP5FQ9Y2H2 1132 aa23.2■■□□□ 1.3
TPM1-204ENST00000334895 PCDHB7Q9Y5E2 793 aa23.2■■□□□ 1.3
TPM1-204ENST00000334895 RANBP2P49792 3224 aaKnown RBP23.19■■□□□ 1.3
TPM1-204ENST00000334895 PHACTR2O75167 634 aa23.19■■□□□ 1.3
TPM1-204ENST00000334895 ITGB3P05106 788 aa23.19■■□□□ 1.3
TPM1-204ENST00000334895 GATMP50440 423 aa23.19■■□□□ 1.3
TPM1-204ENST00000334895 WDR5P61964 334 aaKnown RBP23.19■■□□□ 1.3
TPM1-204ENST00000334895 GLB1LQ6UWU2 654 aa23.19■■□□□ 1.3
TPM1-204ENST00000334895 ZNF365Q70YC5 407 aa23.19■■□□□ 1.3
TPM1-204ENST00000334895 NPAS4Q8IUM7 802 aa23.19■■□□□ 1.3
TPM1-204ENST00000334895 GANQ9H2C0 597 aa23.19■■□□□ 1.3
TPM1-204ENST00000334895 GOLGA2P5Q9HBQ8 144 aa23.19■■□□□ 1.3
TPM1-204ENST00000334895 PLCB1Q9NQ66 1216 aa23.19■■□□□ 1.3
TPM1-204ENST00000334895 COL4A6Q14031 1691 aa23.19■■□□□ 1.3
TPM1-204ENST00000334895 RNF225M0QZC1 329 aaPredicted RBP23.19■■□□□ 1.3
TPM1-204ENST00000334895 POMCP01189 267 aa23.19■■□□□ 1.3
TPM1-204ENST00000334895 GYPCP04921 128 aa23.19■■□□□ 1.3
TPM1-204ENST00000334895 THP07101 528 aa23.19■■□□□ 1.3
TPM1-204ENST00000334895 MYL6P60660 151 aa23.19■■□□□ 1.3
TPM1-204ENST00000334895 DEFB103AP81534 67 aa23.19■■□□□ 1.3
TPM1-204ENST00000334895 PRPF38BQ5VTL8 546 aaKnown RBP23.19■■□□□ 1.3
TPM1-204ENST00000334895 OTOP2Q7RTS6 562 aa23.19■■□□□ 1.3
TPM1-204ENST00000334895 DRC7Q8IY82 874 aa23.19■■□□□ 1.3
TPM1-204ENST00000334895 BEST2Q8NFU1 509 aa23.19■■□□□ 1.3
TPM1-204ENST00000334895 GDF15Q99988 308 aa23.19■■□□□ 1.3
TPM1-204ENST00000334895 AJAP1Q9UKB5 411 aaPredicted RBP23.19■■□□□ 1.3
TPM1-204ENST00000334895 ITGA11Q9UKX5 1188 aa23.19■■□□□ 1.3
TPM1-204ENST00000334895 FNDC1Q4ZHG4 1894 aaPredicted RBP23.18■■□□□ 1.3
TPM1-204ENST00000334895 PPEF2O14830 753 aa23.18■■□□□ 1.3
TPM1-204ENST00000334895 BAIAP3O94812 1187 aa23.18■■□□□ 1.3
TPM1-204ENST00000334895 CYP3A5P20815 502 aa23.18■■□□□ 1.3
TPM1-204ENST00000334895 POLR2BP30876 1174 aaKnown RBP23.18■■□□□ 1.3
TPM1-204ENST00000334895 TMEM240Q5SV17 173 aa23.18■■□□□ 1.3
TPM1-204ENST00000334895 KLHDC7AQ5VTJ3 777 aa23.18■■□□□ 1.3
TPM1-204ENST00000334895 PHLDB3Q6NSJ2 640 aa23.18■■□□□ 1.3
TPM1-204ENST00000334895 GJB7Q6PEY0 223 aa23.18■■□□□ 1.3
TPM1-204ENST00000334895 CASD1Q96PB1 797 aa23.18■■□□□ 1.3
TPM1-204ENST00000334895 XYLT2Q9H1B5 865 aa23.18■■□□□ 1.3
TPM1-204ENST00000334895 APOBEC3GQ9HC16 384 aaKnown RBP23.18■■□□□ 1.3
TPM1-204ENST00000334895 CACNG4Q9UBN1 327 aa23.18■■□□□ 1.3
TPM1-204ENST00000334895 LRFN2Q9ULH4 789 aa23.18■■□□□ 1.3
TPM1-204ENST00000334895 SCN1AP35498 2009 aa23.17■■□□□ 1.3
TPM1-204ENST00000334895 B4GALT3O60512 393 aa23.17■■□□□ 1.3
TPM1-204ENST00000334895 EFCAB14O75071 495 aa23.17■■□□□ 1.3
TPM1-204ENST00000334895 ASS1P00966 412 aaKnown RBP23.17■■□□□ 1.3
TPM1-204ENST00000334895 LRMPQ12912 555 aa23.17■■□□□ 1.3
TPM1-204ENST00000334895 GRIK3Q13003 919 aa23.17■■□□□ 1.3
TPM1-204ENST00000334895 NOMO2Q5JPE7 1267 aa23.17■■□□□ 1.3
TPM1-204ENST00000334895 SPOPLQ6IQ16 392 aa23.17■■□□□ 1.3
TPM1-204ENST00000334895 CHRDL2Q6WN34 429 aa23.17■■□□□ 1.3
TPM1-204ENST00000334895 ARHGEF19Q8IW93 802 aa23.17■■□□□ 1.3
TPM1-204ENST00000334895 PPP1R9BQ96SB3 815 aa23.17■■□□□ 1.3
TPM1-204ENST00000334895 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.17■■□□□ 1.31e-6■□□□□ 10.6
TPM1-204ENST00000334895 ANO9A1A5B4 782 aa23.16■■□□□ 1.3
TPM1-204ENST00000334895 FGBP02675 491 aa23.16■■□□□ 1.3
TPM1-204ENST00000334895 KRT19P08727 400 aa23.16■■□□□ 1.3
TPM1-204ENST00000334895 TRPC3Q13507 836 aa23.16■■□□□ 1.3
TPM1-204ENST00000334895 FIGNQ5HY92 759 aa23.16■■□□□ 1.3
TPM1-204ENST00000334895 C9orf57Q5W0N0 161 aa23.16■■□□□ 1.3
TPM1-204ENST00000334895 TMCO2Q7Z6W1 182 aaPredicted RBP23.16■■□□□ 1.3
TPM1-204ENST00000334895 NEK11Q8NG66 645 aa23.16■■□□□ 1.3
TPM1-204ENST00000334895 TATDN2Q93075 761 aa23.16■■□□□ 1.3
TPM1-204ENST00000334895 TOP1MTQ969P6 601 aa23.16■■□□□ 1.3
TPM1-204ENST00000334895 SLC38A7Q9NVC3 462 aa23.16■■□□□ 1.3
TPM1-204ENST00000334895 APEX2Q9UBZ4 518 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms