RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 OR1D2P34982 312 aa10.65□□□□□ -0.7
VPS41-201ENST00000265745 MRE11P49959 708 aa10.65□□□□□ -0.7
VPS41-201ENST00000265745 SMTNP53814 917 aa10.65□□□□□ -0.7
VPS41-201ENST00000265745 PTPN5P54829 565 aa10.65□□□□□ -0.7
VPS41-201ENST00000265745 RAB33AQ14088 237 aa10.65□□□□□ -0.7
VPS41-201ENST00000265745 C3orf58Q8NDZ4 430 aa10.65□□□□□ -0.7
VPS41-201ENST00000265745 KCNN1Q92952 543 aa10.65□□□□□ -0.7
VPS41-201ENST00000265745 CDK5RAP3Q96JB5 506 aa10.65□□□□□ -0.7
VPS41-201ENST00000265745 ZBTB45Q96K62 511 aaPredicted RBP10.65□□□□□ -0.7
VPS41-201ENST00000265745 MYADMQ96S97 322 aa10.65□□□□□ -0.7
VPS41-201ENST00000265745 GOLGA2P5Q9HBQ8 144 aa10.65□□□□□ -0.7
VPS41-201ENST00000265745 SLC38A7Q9NVC3 462 aa10.65□□□□□ -0.7
VPS41-201ENST00000265745 FBXW11Q9UKB1 542 aa10.65□□□□□ -0.7
VPS41-201ENST00000265745 BACE2Q9Y5Z0 518 aa10.65□□□□□ -0.7
VPS41-201ENST00000265745 ZNF318Q5VUA4 2279 aa10.65□□□□□ -0.7
VPS41-201ENST00000265745 BMP15O95972 392 aa10.64□□□□□ -0.71
VPS41-201ENST00000265745 HNRNPA1P09651 372 aaKnown RBP eCLIP10.64□□□□□ -0.71
VPS41-201ENST00000265745 LAMP2P13473 410 aa10.64□□□□□ -0.71
VPS41-201ENST00000265745 HOXA9P31269 272 aa10.64□□□□□ -0.71
VPS41-201ENST00000265745 RPL9P32969 192 aaKnown RBP10.64□□□□□ -0.71
VPS41-201ENST00000265745 UBA7P41226 1012 aa10.64□□□□□ -0.71
VPS41-201ENST00000265745 STRN3Q13033 797 aa10.64□□□□□ -0.71
VPS41-201ENST00000265745 CUL4AQ13619 759 aa10.64□□□□□ -0.71
VPS41-201ENST00000265745 UVSSAQ2YD98 709 aa10.64□□□□□ -0.71
VPS41-201ENST00000265745 SLC10A6Q3KNW5 377 aa10.64□□□□□ -0.71
VPS41-201ENST00000265745 RSPO2Q6UXX9 243 aaPredicted RBP10.64□□□□□ -0.71
VPS41-201ENST00000265745 ZPBP2Q6X784 338 aa10.64□□□□□ -0.71
VPS41-201ENST00000265745 BRAPQ7Z569 592 aa10.64□□□□□ -0.71
VPS41-201ENST00000265745 SLC44A3Q8N4M1 653 aa10.64□□□□□ -0.71
VPS41-201ENST00000265745 LRRC15Q8TF66 581 aa10.64□□□□□ -0.71
VPS41-201ENST00000265745 RSAD2Q8WXG1 361 aa10.64□□□□□ -0.71
VPS41-201ENST00000265745 NXPE3Q969Y0 559 aa10.64□□□□□ -0.71
VPS41-201ENST00000265745 SNX27Q96L92 541 aa10.64□□□□□ -0.71
VPS41-201ENST00000265745 CNTN3Q9P232 1028 aa10.64□□□□□ -0.71
VPS41-201ENST00000265745 LARSQ9P2J5 1176 aaKnown RBP10.64□□□□□ -0.71
VPS41-201ENST00000265745 MTRRQ9UBK8 725 aa10.64□□□□□ -0.71
VPS41-201ENST00000265745 DUSP12Q9UNI6 340 aa10.64□□□□□ -0.71
VPS41-201ENST00000265745 WDFY4Q6ZS81 3184 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 ANHXE9PGG2 379 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 H0YCG3 227 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 I3L4J1 428 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 PODXLO00592 558 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 CLDN3O15551 220 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 C8AP07357 584 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 NPR3P17342 541 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 TKTP29401 623 aaKnown RBP10.63□□□□□ -0.71
VPS41-201ENST00000265745 LONP1P36776 959 aaKnown RBP10.63□□□□□ -0.71
VPS41-201ENST00000265745 BRCC3P46736 316 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 CLCN5P51795 746 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 GRIN1Q05586 938 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 MCL1Q07820 350 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 NOLC1Q14978 699 aaKnown RBP eCLIP10.63□□□□□ -0.71
VPS41-201ENST00000265745 SF3A1Q15459 793 aaKnown RBP10.63□□□□□ -0.71
VPS41-201ENST00000265745 PPM1LQ5SGD2 360 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 AXDND1Q5T1B0 1012 aaPredicted RBP10.63□□□□□ -0.71
VPS41-201ENST00000265745 LIN9Q5TKA1 542 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 ANKS3Q6ZW76 656 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 RTL10Q7L3V2 364 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 GRASPQ7Z6J2 395 aaPredicted RBP10.63□□□□□ -0.71
VPS41-201ENST00000265745 TMEM105Q8N8V8 129 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 ZNF454Q8N9F8 522 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 TTC13Q8NBP0 860 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 ZDHHC16Q969W1 377 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 C18orf25Q96B23 403 aaPredicted RBP10.63□□□□□ -0.71
VPS41-201ENST00000265745 CALML4Q96GE6 196 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 PLEKHA5Q9HAU0 1116 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 BLOC1S4Q9NUP1 217 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 ANKFY1Q9P2R3 1169 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 ODF2LQ9ULJ1 636 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 CDY1Q9Y6F8 540 aa10.63□□□□□ -0.71
VPS41-201ENST00000265745 CCL16O15467 120 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 NARSO43776 548 aaKnown RBP10.62□□□□□ -0.71
VPS41-201ENST00000265745 TBC1D4O60343 1298 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 POU2F2P09086 479 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 HARSP12081 509 aaKnown RBP10.62□□□□□ -0.71
VPS41-201ENST00000265745 PDCP20941 246 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 FSHRP23945 695 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 ZNF131P52739 623 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 NCKAP1LP55160 1127 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 NTHL1P78549 312 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 MRPL58Q14197 206 aaKnown RBP10.62□□□□□ -0.71
VPS41-201ENST00000265745 SEZ6Q53EL9 994 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 SLC8B1Q6J4K2 584 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 GET4Q7L5D6 327 aaPredicted RBP10.62□□□□□ -0.71
VPS41-201ENST00000265745 HAUS6Q7Z4H7 955 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 GPBP1Q86WP2 473 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 ZNF461Q8TAF7 563 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 SLC7A14Q8TBB6 771 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 REEP2Q9BRK0 252 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 HAPLN2Q9GZV7 340 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 IRF2BPLQ9H1B7 796 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 MFSD1Q9H3U5 465 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 WNT16Q9UBV4 365 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 FBXL21Q9UKT6 434 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 CDH7Q9ULB5 785 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 TBX20Q9UMR3 447 aa10.62□□□□□ -0.71
VPS41-201ENST00000265745 ZFP37Q9Y6Q3 630 aaPredicted RBP10.62□□□□□ -0.71
VPS41-201ENST00000265745 TTC26A0AVF1 554 aa10.61□□□□□ -0.71
VPS41-201ENST00000265745 H0Y858 1186 aa10.61□□□□□ -0.71
VPS41-201ENST00000265745 SYN3O14994 580 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms