RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 KBTBD2Q8IY47 623 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 SMC6Q96SB8 1091 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 CCDC77Q9BR77 488 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 STOML1Q9UBI4 398 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 HEY2Q9UBP5 337 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 ESYT2A0FGR8 921 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 KRT4P19013 534 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 VHLP40337 213 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 CUL3Q13618 768 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 SPARCL1Q14515 664 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 POTEAQ6S8J7 498 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 C4orf50Q6ZRC1 276 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 CYFIP1Q7L576 1253 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 ERMNQ8TAM6 284 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 DCLRE1BQ9H816 532 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 RALAP11233 206 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 SKIP12755 728 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 KRT5P13647 590 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 AMPD1P23109 780 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 CCNG1P51959 295 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 PPP3CAQ08209 521 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 RINT1Q6NUQ1 792 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 LRRC6Q86X45 466 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 KIAA1586Q9HCI6 787 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 EP400Q96L91 3159 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 GAS8O95995 478 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 BCRP11274 1271 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 SERPINB3P29508 390 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 MAPK6Q16659 721 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 LRRC74BQ6ZQY2 392 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 ARHGAP22Q7Z5H3 698 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 CPA5Q8WXQ8 436 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 FAM161BQ96MY7 647 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 EIF2AK1Q9BQI3 630 aaKnown RBP15.25■□□□□ 0.03
SDC1-201ENST00000254351 ZNF652Q9Y2D9 606 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 GPR75-ASB3A0A0A6YYF3 556 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 ZBTB5O15062 677 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 DCTN3O75935 186 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 STK10O94804 968 aaKnown RBP15.25■□□□□ 0.03
SDC1-201ENST00000254351 NPTXRO95502 500 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 ASMTLO95671 621 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 KRT10P13645 584 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 ACADSP16219 412 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 CCNFP41002 786 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 MAGEA4P43358 317 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 ZNF543Q08ER8 600 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 PARP6Q2NL67 630 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 LRRC23Q53EV4 343 aaPredicted RBP15.25■□□□□ 0.03
SDC1-201ENST00000254351 PCNX4Q63HM2 1172 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 ZBED8Q8IZ13 594 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 HIPK4Q8NE63 616 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 MOV10L1Q9BXT6 1211 aaKnown RBP15.25■□□□□ 0.03
SDC1-201ENST00000254351 RTFDC1Q9BY42 306 aaPredicted RBP15.25■□□□□ 0.03
SDC1-201ENST00000254351 AGPAT3Q9NRZ7 376 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 LRRC4BQ9NT99 713 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.25■□□□□ 0.035e-8■■■□□ 15.1
SDC1-201ENST00000254351 ASB3Q9Y575 518 aa15.25■□□□□ 0.03
SDC1-201ENST00000254351 SNED1Q8TER0 1413 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 SPATA31D3P0C874 917 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 ALAS1P13196 640 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 ITIH2P19823 946 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 MAPK4P31152 587 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 YARSP54577 528 aaKnown RBP15.24■□□□□ 0.03
SDC1-201ENST00000254351 PLCB3Q01970 1234 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 RC3H1Q5TC82 1133 aaKnown RBP15.24■□□□□ 0.03
SDC1-201ENST00000254351 SPATA31D4Q6ZUB0 917 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 CLNKQ7Z7G1 428 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 PPFIBP2Q8ND30 876 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 JDP2Q8WYK2 163 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 TMEM117Q9H0C3 514 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 PYGBP11216 843 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 PTPN4P29074 926 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 GCLCP48506 637 aaPredicted RBP15.24■□□□□ 0.03
SDC1-201ENST00000254351 CACNB3P54284 484 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 MCL1Q07820 350 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 MKRN3Q13064 507 aaKnown RBP15.24■□□□□ 0.03
SDC1-201ENST00000254351 MOGSQ13724 837 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 MFSD14BQ5SR56 506 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 RINLQ6ZS11 566 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 PASD1Q8IV76 773 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 CBWD1Q9BRT8 395 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 SYT11Q9BT88 431 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 FHDC1Q9C0D6 1143 aaPredicted RBP15.24■□□□□ 0.03
SDC1-201ENST00000254351 WNT8AQ9H1J5 351 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 SERPINA10Q9UK55 444 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 ZMYM2Q9UBW7 1377 aa15.24■□□□□ 0.03
SDC1-201ENST00000254351 KITP10721 976 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 HSPA6P17066 643 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 ATF7P17544 494 aaPredicted RBP15.23■□□□□ 0.03
SDC1-201ENST00000254351 ATP13A4Q4VNC1 1196 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 ZC3H3Q8IXZ2 948 aaKnown RBP15.23■□□□□ 0.03
SDC1-201ENST00000254351 FBXO27Q8NI29 283 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 C10orf82Q8WW14 230 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 MAIP1Q8WWC4 291 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 BORCS6Q96GS4 357 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 MAK16Q9BXY0 300 aaKnown RBP15.23■□□□□ 0.03
SDC1-201ENST00000254351 LMCD1Q9NZU5 365 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 EDF1O60869 148 aaKnown RBP15.23■□□□□ 0.03
SDC1-201ENST00000254351 IVDP26440 423 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 KDSRQ06136 332 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms