RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W YKL183C-AQ3E765 70 aa3.87□□□□□ -1.79
SSH4YKL124W RIB3Q99258 208 aa3.87□□□□□ -1.79
SSH4YKL124W DIF1O13577 133 aa3.86□□□□□ -1.79
SSH4YKL124W ADH2P00331 348 aaKnown RBP3.86□□□□□ -1.79
SSH4YKL124W RPS31P05759 152 aaKnown RBP3.86□□□□□ -1.79
SSH4YKL124W NFT1P0CE68 1218 aa3.86□□□□□ -1.79
SSH4YKL124W CPR4P25334 318 aa3.86□□□□□ -1.79
SSH4YKL124W MDH3P32419 343 aaKnown RBP RIP-Chip data3.86□□□□□ -1.79not detected
SSH4YKL124W MTC7P32633 139 aa3.86□□□□□ -1.79
SSH4YKL124W MCH2P36032 473 aa3.86□□□□□ -1.79
SSH4YKL124W YBR220CP38318 560 aa3.86□□□□□ -1.79
SSH4YKL124W YAR028WP39548 234 aa3.86□□□□□ -1.79
SSH4YKL124W YNL194CP40169 301 aa3.86□□□□□ -1.79
SSH4YKL124W GDS1P41913 522 aa3.86□□□□□ -1.79
SSH4YKL124W SLS1P42900 643 aa3.86□□□□□ -1.79
SSH4YKL124W SIP18P50263 79 aa3.86□□□□□ -1.79
SSH4YKL124W BRR6P53062 197 aa3.86□□□□□ -1.79
SSH4YKL124W COS1P53822 381 aa3.86□□□□□ -1.79
SSH4YKL124W YMD8Q03697 442 aa3.86□□□□□ -1.79
SSH4YKL124W ELP6Q04868 273 aa3.86□□□□□ -1.79
SSH4YKL124W MIM1Q08176 113 aa3.86□□□□□ -1.79
SSH4YKL124W SEC16P48415 2195 aaKnown RBP3.85□□□□□ -1.79
SSH4YKL124W HTB1P02293 131 aaKnown RBP3.85□□□□□ -1.79
SSH4YKL124W HTB2P02294 131 aa3.85□□□□□ -1.79
SSH4YKL124W SNF4P12904 322 aa3.85□□□□□ -1.79
SSH4YKL124W BUD23P25627 275 aaPredicted RBP3.85□□□□□ -1.79
SSH4YKL124W UBC8P28263 218 aa3.85□□□□□ -1.79
SSH4YKL124W SPT10P35208 640 aa3.85□□□□□ -1.79
SSH4YKL124W YKL077WP36081 392 aa3.85□□□□□ -1.79
SSH4YKL124W ECM8P38246 354 aa3.85□□□□□ -1.79
SSH4YKL124W PTC7P38797 343 aa3.85□□□□□ -1.79
SSH4YKL124W BDH1P39714 382 aa3.85□□□□□ -1.79
SSH4YKL124W ISC1P40015 477 aaKnown RBP3.85□□□□□ -1.79
SSH4YKL124W YER084WP40057 128 aa3.85□□□□□ -1.79
SSH4YKL124W GAT2P40209 560 aa3.85□□□□□ -1.79
SSH4YKL124W CCC1P47818 322 aa3.85□□□□□ -1.79
SSH4YKL124W COG5P53951 403 aa3.85□□□□□ -1.79
SSH4YKL124W TMA20P89886 181 aaPredicted RBP3.85□□□□□ -1.79
SSH4YKL124W YPL080CQ02826 108 aa3.85□□□□□ -1.79
SSH4YKL124W RUB1Q03919 77 aa3.85□□□□□ -1.79
SSH4YKL124W YDR387CQ04162 555 aa3.85□□□□□ -1.79
SSH4YKL124W MRPL51Q06090 140 aaPredicted RBP3.85□□□□□ -1.79
SSH4YKL124W IZH2Q12442 317 aa3.85□□□□□ -1.79
SSH4YKL124W WIP1Q2V2P8 89 aa3.85□□□□□ -1.79
SSH4YKL124W YDL007C-AQ2V2Q0 85 aa3.85□□□□□ -1.79
SSH4YKL124W UBA3Q99344 299 aa3.85□□□□□ -1.79
SSH4YKL124W Q0297Q9ZZV8 51 aa3.85□□□□□ -1.79
SSH4YKL124W BLM10P43583 2143 aa3.84□□□□□ -1.79
SSH4YKL124W RPP2AP05319 106 aaKnown RBP3.84□□□□□ -1.79
SSH4YKL124W KIN28P06242 306 aa3.84□□□□□ -1.79
SSH4YKL124W PDE2P06776 526 aa3.84□□□□□ -1.79
SSH4YKL124W PET122P10355 254 aa3.84□□□□□ -1.79
SSH4YKL124W YKL187CP34231 750 aa3.84□□□□□ -1.79
SSH4YKL124W PRS4P38063 326 aaPredicted RBP3.84□□□□□ -1.79
SSH4YKL124W ICS2P38284 255 aa3.84□□□□□ -1.79
SSH4YKL124W VBA2P38358 474 aaKnown RBP3.84□□□□□ -1.79
SSH4YKL124W RPS20P38701 121 aaKnown RBP3.84□□□□□ -1.79
SSH4YKL124W CHL4P38907 458 aa3.84□□□□□ -1.79
SSH4YKL124W SRP14P38985 146 aa3.84□□□□□ -1.79
SSH4YKL124W RRG9P40156 214 aa3.84□□□□□ -1.79
SSH4YKL124W VHS2P40463 436 aa3.84□□□□□ -1.79
SSH4YKL124W SNL1P40548 159 aa3.84□□□□□ -1.79
SSH4YKL124W YFR057WP43625 151 aa3.84□□□□□ -1.79
SSH4YKL124W IZH1Q03419 316 aa3.84□□□□□ -1.79
SSH4YKL124W YDR102CQ03864 110 aa3.84□□□□□ -1.79
SSH4YKL124W MCH4Q08268 501 aa3.84□□□□□ -1.79
SSH4YKL124W YLR126CQ12288 251 aa3.84□□□□□ -1.79
SSH4YKL124W YDR157WA0A023PZE8 133 aa3.84□□□□□ -1.8
SSH4YKL124W GPM1P00950 247 aaKnown RBP3.84□□□□□ -1.8
SSH4YKL124W MSW1P04803 379 aa3.84□□□□□ -1.8
SSH4YKL124W TPK3P05986 398 aa3.84□□□□□ -1.8
SSH4YKL124W TRP4P07285 380 aaPredicted RBP3.84□□□□□ -1.8
SSH4YKL124W RPS16AP0CX51 143 aaKnown RBP3.84□□□□□ -1.8
SSH4YKL124W RPS16BP0CX52 143 aaKnown RBP3.84□□□□□ -1.8
SSH4YKL124W PHO80P20052 293 aa3.84□□□□□ -1.8
SSH4YKL124W HXT2P23585 541 aa3.84□□□□□ -1.8
SSH4YKL124W VMA16P23968 213 aa3.84□□□□□ -1.8
SSH4YKL124W RFA3P26755 122 aaKnown RBP3.84□□□□□ -1.8
SSH4YKL124W DER1P38307 211 aa3.84□□□□□ -1.8
SSH4YKL124W SSY5P47002 699 aa3.84□□□□□ -1.8
SSH4YKL124W MSE1P48525 536 aa3.84□□□□□ -1.8
SSH4YKL124W COS10P52924 374 aa3.84□□□□□ -1.8
SSH4YKL124W TNA1P53322 534 aa3.84□□□□□ -1.8
SSH4YKL124W YNR066CP53752 436 aa3.84□□□□□ -1.8
SSH4YKL124W TDA6Q06466 467 aa3.84□□□□□ -1.8
SSH4YKL124W SOG2Q08817 791 aa3.84□□□□□ -1.8
SSH4YKL124W MED2Q12124 431 aa3.84□□□□□ -1.8
SSH4YKL124W YPR053CQ6Q5F3 151 aa3.84□□□□□ -1.8
SSH4YKL124W ATR1P13090 542 aa3.83□□□□□ -1.8
SSH4YKL124W ELF1P36053 145 aa3.83□□□□□ -1.8
SSH4YKL124W RTC2P38279 296 aa3.83□□□□□ -1.8
SSH4YKL124W PRS2P38620 318 aaKnown RBP3.83□□□□□ -1.8
SSH4YKL124W MRX5P47007 382 aa3.83□□□□□ -1.8
SSH4YKL124W SFH5P47008 294 aa3.83□□□□□ -1.8
SSH4YKL124W HMS2P47175 358 aa3.83□□□□□ -1.8
SSH4YKL124W MTM1P53320 366 aa3.83□□□□□ -1.8
SSH4YKL124W ASI2P53895 289 aa3.83□□□□□ -1.8
SSH4YKL124W OST6Q03723 332 aa3.83□□□□□ -1.8
SSH4YKL124W YDR391CQ04170 232 aa3.83□□□□□ -1.8
SSH4YKL124W MRPL35Q06678 367 aa3.83□□□□□ -1.8
Retrieved 100 of 5,963 RNA–protein pairs in 28.2 ms