RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 USP15Q9Y4E8 981 aaPredicted RBP6.84□□□□□ -1.31
VPS29-212ENST00000621131 MARCH11A6NNE9 402 aa6.83□□□□□ -1.32
VPS29-212ENST00000621131 SNRPA1P09661 255 aaKnown RBP6.83□□□□□ -1.32
VPS29-212ENST00000621131 ECHS1P30084 290 aa6.83□□□□□ -1.32
VPS29-212ENST00000621131 MTNR1BP49286 362 aa6.83□□□□□ -1.32
VPS29-212ENST00000621131 ERVK-21P61565 698 aa6.83□□□□□ -1.32
VPS29-212ENST00000621131 HECTD2Q5U5R9 776 aa6.83□□□□□ -1.32
VPS29-212ENST00000621131 AGAP9Q5VTM2 703 aa6.83□□□□□ -1.32
VPS29-212ENST00000621131 Q6YL49 198 aa6.83□□□□□ -1.32
VPS29-212ENST00000621131 ZNF575Q86XF7 245 aa6.83□□□□□ -1.32
VPS29-212ENST00000621131 PQLC1Q8N2U9 271 aa6.83□□□□□ -1.32
VPS29-212ENST00000621131 ADAM2Q99965 735 aa6.83□□□□□ -1.32
VPS29-212ENST00000621131 PCGF6Q9BYE7 350 aa6.83□□□□□ -1.32
VPS29-212ENST00000621131 TOR3AQ9H497 397 aa6.83□□□□□ -1.32
VPS29-212ENST00000621131 DNAJC28Q9NX36 388 aa6.83□□□□□ -1.32
VPS29-212ENST00000621131 SYBUQ9NX95 663 aa6.83□□□□□ -1.32
VPS29-212ENST00000621131 PHLDB1Q86UU1 1377 aa6.82□□□□□ -1.32
VPS29-212ENST00000621131 DISP3Q9P2K9 1392 aa6.82□□□□□ -1.32
VPS29-212ENST00000621131 ARHGAP35Q9NRY4 1499 aa6.82□□□□□ -1.32
VPS29-212ENST00000621131 LMNAP02545 664 aaKnown RBP6.82□□□□□ -1.32
VPS29-212ENST00000621131 SPATA31D3P0C874 917 aa6.82□□□□□ -1.32
VPS29-212ENST00000621131 GSPT1P15170 499 aaKnown RBP6.82□□□□□ -1.32
VPS29-212ENST00000621131 BMP5P22003 454 aa6.82□□□□□ -1.32
VPS29-212ENST00000621131 GUCY1A2P33402 732 aa6.82□□□□□ -1.32
VPS29-212ENST00000621131 MALLQ13021 153 aa6.82□□□□□ -1.32
VPS29-212ENST00000621131 RNF219Q5W0B1 726 aaPredicted RBP6.82□□□□□ -1.32
VPS29-212ENST00000621131 AFMIDQ63HM1 303 aa6.82□□□□□ -1.32
VPS29-212ENST00000621131 EGFLAMQ63HQ2 1017 aa6.82□□□□□ -1.32
VPS29-212ENST00000621131 SPATA31D4Q6ZUB0 917 aa6.82□□□□□ -1.32
VPS29-212ENST00000621131 SPATS2Q86XZ4 545 aaKnown RBP6.82□□□□□ -1.32
VPS29-212ENST00000621131 BEND2Q8NDZ0 799 aa6.82□□□□□ -1.32
VPS29-212ENST00000621131 STON2Q8WXE9 905 aa6.82□□□□□ -1.32
VPS29-212ENST00000621131 CYP4F11Q9HBI6 524 aa6.82□□□□□ -1.32
VPS29-212ENST00000621131 CCM2LQ9NUG4 571 aaPredicted RBP6.82□□□□□ -1.32
VPS29-212ENST00000621131 FAM30AQ9NZY2 134 aa6.82□□□□□ -1.32
VPS29-212ENST00000621131 SIK3Q9Y2K2 1263 aa6.82□□□□□ -1.32
VPS29-212ENST00000621131 MAP3K2Q9Y2U5 619 aa6.82□□□□□ -1.32
VPS29-212ENST00000621131 FPGT-TNNI3KV9GXZ4 949 aa6.82□□□□□ -1.32
VPS29-212ENST00000621131 SHROOM2Q13796 1616 aa6.82□□□□□ -1.32
VPS29-212ENST00000621131 IQGAP2Q13576 1575 aa6.82□□□□□ -1.32
VPS29-212ENST00000621131 PIPSLA2A3N6 862 aa6.81□□□□□ -1.32
VPS29-212ENST00000621131 K7ESF4 209 aa6.81□□□□□ -1.32
VPS29-212ENST00000621131 IL2RBP14784 551 aa6.81□□□□□ -1.32
VPS29-212ENST00000621131 PER3P56645 1201 aa6.81□□□□□ -1.32
VPS29-212ENST00000621131 RESTQ13127 1097 aa6.81□□□□□ -1.32
VPS29-212ENST00000621131 SEPT2Q15019 361 aa6.81□□□□□ -1.32
VPS29-212ENST00000621131 NOMO1Q15155 1222 aa6.81□□□□□ -1.32
VPS29-212ENST00000621131 RRP12Q5JTH9 1297 aaKnown RBP6.81□□□□□ -1.32
VPS29-212ENST00000621131 RHOT2Q8IXI1 618 aa6.81□□□□□ -1.32
VPS29-212ENST00000621131 COG1Q8WTW3 980 aa6.81□□□□□ -1.32
VPS29-212ENST00000621131 UHRF1Q96T88 793 aaPredicted RBP6.81□□□□□ -1.32
VPS29-212ENST00000621131 MRI1Q9BV20 369 aa6.81□□□□□ -1.32
VPS29-212ENST00000621131 ATP11BQ9Y2G3 1177 aa6.81□□□□□ -1.32
VPS29-212ENST00000621131 PCDHGA2Q9Y5H1 932 aa6.81□□□□□ -1.32
VPS29-212ENST00000621131 SPATA31D1Q6ZQQ2 1576 aa6.81□□□□□ -1.32
VPS29-212ENST00000621131 CFIP05156 583 aa6.8□□□□□ -1.32
VPS29-212ENST00000621131 ELANEP08246 267 aa6.8□□□□□ -1.32
VPS29-212ENST00000621131 DDX6P26196 483 aaKnown RBP eCLIP6.8□□□□□ -1.32
VPS29-212ENST00000621131 CNGA1P29973 690 aa6.8□□□□□ -1.32
VPS29-212ENST00000621131 SLC6A9P48067 706 aa6.8□□□□□ -1.32
VPS29-212ENST00000621131 SLC5A3P53794 718 aa6.8□□□□□ -1.32
VPS29-212ENST00000621131 GUCY1B3Q02153 619 aa6.8□□□□□ -1.32
VPS29-212ENST00000621131 TP53BP2Q13625 1128 aa6.8□□□□□ -1.32
VPS29-212ENST00000621131 CEP170Q5SW79 1584 aa6.8□□□□□ -1.32
VPS29-212ENST00000621131 FMN1Q68DA7 1419 aa6.8□□□□□ -1.32
VPS29-212ENST00000621131 MED25Q71SY5 747 aa6.8□□□□□ -1.32
VPS29-212ENST00000621131 LINC00476Q8WZB0 136 aa6.8□□□□□ -1.32
VPS29-212ENST00000621131 PHACTR3Q96KR7 559 aa6.8□□□□□ -1.32
VPS29-212ENST00000621131 ADI1Q9BV57 179 aa6.8□□□□□ -1.32
VPS29-212ENST00000621131 LDAHQ9H6V9 325 aa6.8□□□□□ -1.32
VPS29-212ENST00000621131 SYNPO2LQ9H987 977 aa6.8□□□□□ -1.32
VPS29-212ENST00000621131 KLHL11Q9NVR0 708 aa6.8□□□□□ -1.32
VPS29-212ENST00000621131 PRKAB1Q9Y478 270 aa6.8□□□□□ -1.32
VPS29-212ENST00000621131 EPN1Q9Y6I3 576 aaPredicted RBP6.8□□□□□ -1.32
VPS29-212ENST00000621131 SAMD9Q5K651 1589 aa6.79□□□□□ -1.32
VPS29-212ENST00000621131 UNC119BA6NIH7 251 aa6.79□□□□□ -1.32
VPS29-212ENST00000621131 SPDEFO95238 335 aa6.79□□□□□ -1.32
VPS29-212ENST00000621131 HLA-DOAP06340 250 aa6.79□□□□□ -1.32
VPS29-212ENST00000621131 OSMP13725 252 aa6.79□□□□□ -1.32
VPS29-212ENST00000621131 USP14P54578 494 aa6.79□□□□□ -1.32
VPS29-212ENST00000621131 RAP2BP61225 183 aa6.79□□□□□ -1.32
VPS29-212ENST00000621131 UBXN2BQ14CS0 331 aa6.79□□□□□ -1.32
VPS29-212ENST00000621131 TSHZ3Q63HK5 1081 aa6.79□□□□□ -1.32
VPS29-212ENST00000621131 OTUD7BQ6GQQ9 843 aa6.79□□□□□ -1.32
VPS29-212ENST00000621131 OLFML1Q6UWY5 402 aa6.79□□□□□ -1.32
VPS29-212ENST00000621131 LCORLQ8N3X6 602 aa6.79□□□□□ -1.32
VPS29-212ENST00000621131 OR56A1Q8NGH5 318 aa6.79□□□□□ -1.32
VPS29-212ENST00000621131 OR2I1PQ8NGU4 316 aa6.79□□□□□ -1.32
VPS29-212ENST00000621131 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.79□□□□□ -1.32
VPS29-212ENST00000621131 CASKIN2Q8WXE0 1202 aa6.79□□□□□ -1.32
VPS29-212ENST00000621131 COQ10AQ96MF6 247 aa6.79□□□□□ -1.32
VPS29-212ENST00000621131 CRAMP1Q96RY5 1269 aa6.79□□□□□ -1.32
VPS29-212ENST00000621131 LANCL2Q9NS86 450 aa6.79□□□□□ -1.32
VPS29-212ENST00000621131 MOCS1Q9NZB8 636 aa6.79□□□□□ -1.32
VPS29-212ENST00000621131 SLC23A1Q9UHI7 598 aa6.79□□□□□ -1.32
VPS29-212ENST00000621131 GRIN2AQ12879 1464 aa6.79□□□□□ -1.32
VPS29-212ENST00000621131 CFAP43Q8NDM7 1665 aa6.78□□□□□ -1.32
VPS29-212ENST00000621131 MAP3K1Q13233 1512 aa6.78□□□□□ -1.32
VPS29-212ENST00000621131 ENDOD1O94919 500 aa6.78□□□□□ -1.32
VPS29-212ENST00000621131 POMCP01189 267 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms