RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.75□□□□□ -0.05
CIITA-213ENST00000618327 TMC2Q8TDI7 906 aa14.75□□□□□ -0.05
CIITA-213ENST00000618327 CICQ96RK0 1608 aaPredicted RBP14.75□□□□□ -0.05
CIITA-213ENST00000618327 HSD17B4P51659 736 aa14.75□□□□□ -0.05
CIITA-213ENST00000618327 TAP1Q03518 808 aa14.75□□□□□ -0.05
CIITA-213ENST00000618327 TFDP2Q14188 446 aa14.75□□□□□ -0.05
CIITA-213ENST00000618327 RNF180Q86T96 592 aa14.75□□□□□ -0.05
CIITA-213ENST00000618327 C18orf8Q96DM3 657 aa14.75□□□□□ -0.05
CIITA-213ENST00000618327 COL18A1P39060 1754 aa14.75□□□□□ -0.05
CIITA-213ENST00000618327 CASZ1Q86V15 1759 aa14.75□□□□□ -0.05
CIITA-213ENST00000618327 KRT7P08729 469 aa14.75□□□□□ -0.05
CIITA-213ENST00000618327 GTF2H1P32780 548 aa14.75□□□□□ -0.05
CIITA-213ENST00000618327 KIZQ2M2Z5 673 aa14.75□□□□□ -0.05
CIITA-213ENST00000618327 TREML2Q5T2D2 321 aa14.75□□□□□ -0.05
CIITA-213ENST00000618327 CCDC60Q8IWA6 550 aaPredicted RBP14.75□□□□□ -0.05
CIITA-213ENST00000618327 APPL2Q8NEU8 664 aa14.75□□□□□ -0.05
CIITA-213ENST00000618327 GLT1D1Q96MS3 346 aa14.75□□□□□ -0.05
CIITA-213ENST00000618327 FOXN3O00409 490 aaPredicted RBP14.75□□□□□ -0.05
CIITA-213ENST00000618327 ELF1P32519 619 aa14.75□□□□□ -0.05
CIITA-213ENST00000618327 ZNF131P52739 623 aa14.75□□□□□ -0.05
CIITA-213ENST00000618327 EMBQ6PCB8 327 aa14.75□□□□□ -0.05
CIITA-213ENST00000618327 SDCCAG8Q86SQ7 713 aaPredicted RBP14.75□□□□□ -0.05
CIITA-213ENST00000618327 ANKRD42Q8N9B4 389 aa14.75□□□□□ -0.05
CIITA-213ENST00000618327 REPS2Q8NFH8 660 aa14.75□□□□□ -0.05
CIITA-213ENST00000618327 PGBD4Q96DM1 585 aa14.75□□□□□ -0.05
CIITA-213ENST00000618327 CAPN7Q9Y6W3 813 aa14.75□□□□□ -0.05
CIITA-213ENST00000618327 ZBED1O96006 694 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 ALDH1A1P00352 501 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 STILQ15468 1287 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 NUP188Q5SRE5 1749 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 GKAP1Q5VSY0 366 aaPredicted RBP14.74□□□□□ -0.05
CIITA-213ENST00000618327 CCDC13Q8IYE1 715 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 ARHGAP24Q8N264 748 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 DNAJC19Q96DA6 116 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 HSD17B14Q9BPX1 270 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 DDX47Q9H0S4 455 aaKnown RBP14.74□□□□□ -0.05
CIITA-213ENST00000618327 STAP1Q9ULZ2 295 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 NOC2LQ9Y3T9 749 aaKnown RBP14.74□□□□□ -0.05
CIITA-213ENST00000618327 USP2O75604 605 aaPredicted RBP14.74□□□□□ -0.05
CIITA-213ENST00000618327 ITGA4P13612 1032 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 SLMAPQ14BN4 828 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 DCAF4L1Q3SXM0 396 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 CYP4F22Q6NT55 531 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 ARHGEF18Q6ZSZ5 1173 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 POP1Q99575 1024 aaKnown RBP14.74□□□□□ -0.05
CIITA-213ENST00000618327 STRCQ7RTU9 1775 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 GTPBP10A4D1E9 387 aaKnown RBP14.74□□□□□ -0.05
CIITA-213ENST00000618327 FZD9O00144 591 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 TMEM253P0C7T8 217 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 KRT3P12035 628 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 ATP1A2P50993 1020 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 CYP24A1Q07973 514 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 CASP8Q14790 479 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 MMS22LQ6ZRQ5 1243 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 TTC13Q8NBP0 860 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 MGARPQ8TDB4 240 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 A0A087WZ62 844 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 ATP9AO75110 1047 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 PRPSAP1Q14558 356 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 NAA30Q147X3 362 aaPredicted RBP14.74□□□□□ -0.05
CIITA-213ENST00000618327 KCTD16Q68DU8 428 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 BZW1Q7L1Q6 419 aaKnown RBP14.74□□□□□ -0.05
CIITA-213ENST00000618327 REXO1L1PQ8IX06 675 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 HPDLQ96IR7 371 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 FDXACB1Q9BRP7 624 aaPredicted RBP14.74□□□□□ -0.05
CIITA-213ENST00000618327 SNX24Q9Y343 169 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 LTBP4Q8N2S1 1624 aa14.74□□□□□ -0.05
CIITA-213ENST00000618327 STRCP1A6NGW2 1772 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 A0A087X0T9 212 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 SPDYE5A6NIY4 337 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 ITGB3P05106 788 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 FAM228BP0C875 321 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 CUL2Q13617 745 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 ZNF677Q86XU0 584 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 SPATA4Q8NEY3 305 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 BCAS4Q8TDM0 211 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 ATP2A3Q93084 1043 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 SPATA31C1P0DKV0 1188 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 GCKP35557 465 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 SLC1A1P43005 524 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 PPM1FP49593 454 aaPredicted RBP14.73□□□□□ -0.05
CIITA-213ENST00000618327 FKBP1BP68106 108 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 EPC2Q52LR7 807 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 VPS52Q8N1B4 723 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 GLIS3Q8NEA6 775 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 RNPC3Q96LT9 517 aaKnown RBP14.73□□□□□ -0.05
CIITA-213ENST00000618327 MYCBPQ99417 103 aaPredicted RBP14.73□□□□□ -0.05
CIITA-213ENST00000618327 NT5C1AQ9BXI3 368 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 NAGPAQ9UK23 515 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 STX2P32856 288 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 CCDC62Q6P9F0 684 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 ZBED2Q9BTP6 218 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 MTMR12Q9C0I1 747 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 SLC38A7Q9NVC3 462 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 TFR2Q9UP52 801 aa14.73□□□□□ -0.05
CIITA-213ENST00000618327 POC1B-GALNT4F8VUJ3 575 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 CSPG5O95196 566 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 ADCYAP1R1P41586 468 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 SLC12A2P55011 1212 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 CDK17Q00537 523 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms