RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 GRM4Q14833 912 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 METTL21CQ5VZV1 264 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 C1orf228Q6PIY5 440 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 CAPN12Q6ZSI9 719 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 PASD1Q8IV76 773 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 ZFPM1Q8IX07 1006 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 PLEKHO2Q8TD55 490 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 COA7Q96BR5 231 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 FHDC1Q9C0D6 1143 aaPredicted RBP10.86□□□□□ -0.67
VPS39-214ENST00000614932 KIAA1683Q9H0B3 1180 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 AZI2Q9H6S1 392 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 TMEM260Q9NX78 707 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 RWDD2AQ9UIY3 292 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 TMEM59LQ9UK28 342 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 PCDHA6Q9UN73 950 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 PCDHA8Q9Y5H6 950 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 TRIM64CA6NLI5 447 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 RASA4BC9J798 803 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 VILLO15195 856 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 RASA4O43374 803 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 ZBED1O96006 694 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 NUDT17P0C025 328 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 GRIA2P42262 883 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 NAA20P61599 178 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 NFIAQ12857 509 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 CNGA3Q16281 694 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 CCSAPQ6IQ19 270 aaPredicted RBP10.85□□□□□ -0.67
VPS39-214ENST00000614932 PHLDB2Q86SQ0 1253 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 CROCCP2Q86T23 111 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 ZNF579Q8NAF0 562 aaKnown RBP10.85□□□□□ -0.67
VPS39-214ENST00000614932 ZNF507Q8TCN5 953 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 SKA1Q96BD8 255 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 INPP4AQ96PE3 977 aaPredicted RBP10.85□□□□□ -0.67
VPS39-214ENST00000614932 STMN4Q9H169 189 aaPredicted RBP10.85□□□□□ -0.67
VPS39-214ENST00000614932 TLE6Q9H808 572 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 USP29Q9HBJ7 922 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 USP40Q9NVE5 1235 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 AIPL1Q9NZN9 384 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 PCDHA4Q9UN74 947 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 FAF1Q9UNN5 650 aaPredicted RBP10.85□□□□□ -0.67
VPS39-214ENST00000614932 SBF2Q86WG5 1849 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 CCDC88AQ3V6T2 1871 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 TRAFD1O14545 582 aaPredicted RBP10.85□□□□□ -0.67
VPS39-214ENST00000614932 RNASEH1O60930 286 aaKnown RBP10.85□□□□□ -0.67
VPS39-214ENST00000614932 DGKIO75912 1065 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 FGFR1OPO95684 399 aaKnown RBP10.85□□□□□ -0.67
VPS39-214ENST00000614932 SLC16A2P36021 539 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 MKRN3Q13064 507 aaKnown RBP10.85□□□□□ -0.67
VPS39-214ENST00000614932 ARL13BQ3SXY8 428 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 C6orf118Q5T5N4 469 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 TAOK1Q7L7X3 1001 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 PPP1R14CQ8TAE6 165 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 USP6NLQ92738 828 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 HPS3Q969F9 1004 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 MAELQ96JY0 434 aaKnown RBP10.85□□□□□ -0.67
VPS39-214ENST00000614932 TTYH3Q9C0H2 523 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 PSTPIP2Q9H939 334 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 SELENONQ9NZV5 590 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 PJA2O43164 708 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 CCNT1O60563 726 aaKnown RBP10.85□□□□□ -0.67
VPS39-214ENST00000614932 TUFMP49411 452 aaKnown RBP10.85□□□□□ -0.67
VPS39-214ENST00000614932 RNASE9P60153 205 aaKnown RBP10.85□□□□□ -0.67
VPS39-214ENST00000614932 COG7P83436 770 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 PFKPQ01813 784 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 DSG1Q02413 1049 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 ARHGEF6Q15052 776 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 C16orf86Q6ZW13 317 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 GJA10Q969M2 543 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 CCDC127Q96BQ5 260 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 ERP27Q96DN0 273 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 TCP11L1Q9NUJ3 509 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 MTUS1Q9ULD2 1270 aa10.85□□□□□ -0.67
VPS39-214ENST00000614932 LY75O60449 1722 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 KIAA1551Q9HCM1 1747 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 SMCO2A6NFE2 343 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 TTC34A8MYJ7 566 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 DAPK3O43293 454 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 MTRF1O75570 445 aaKnown RBP10.84□□□□□ -0.67
VPS39-214ENST00000614932 PIM1P11309 404 aaPredicted RBP10.84□□□□□ -0.67
VPS39-214ENST00000614932 CHRNA5P30532 468 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 PAK1Q13153 545 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 SLC27A3Q5K4L6 730 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 RRAGBQ5VZM2 374 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 RBM44Q6ZP01 1051 aaKnown RBP10.84□□□□□ -0.67
VPS39-214ENST00000614932 ACAD11Q709F0 780 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 ZNF280CQ8ND82 737 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 PRPF31Q8WWY3 499 aaKnown RBP10.84□□□□□ -0.67
VPS39-214ENST00000614932 STMN2Q93045 179 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 GRAMD1AQ96CP6 724 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 SALL4Q9UJQ4 1053 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 GDAQ9Y2T3 454 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 NUMBLQ9Y6R0 609 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 ZNF831Q5JPB2 1677 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 TNFRSF10AO00220 468 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 SRGNP10124 158 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 PTPN4P29074 926 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 DNM2P50570 870 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 DNA2P51530 1060 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 POLGP54098 1239 aaPredicted RBP10.84□□□□□ -0.67
VPS39-214ENST00000614932 TUBA1BP68363 451 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms