RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 PLXNA3P51805 1871 aa17.29■□□□□ 0.36
VRK3-221ENST00000600284 CLDN3O15551 220 aa17.29■□□□□ 0.36
VRK3-221ENST00000600284 HOXA9P31269 272 aa17.29■□□□□ 0.36
VRK3-221ENST00000600284 RPL9P32969 192 aaKnown RBP17.29■□□□□ 0.36
VRK3-221ENST00000600284 OSTNP61366 133 aa17.29■□□□□ 0.36
VRK3-221ENST00000600284 MCL1Q07820 350 aa17.29■□□□□ 0.36
VRK3-221ENST00000600284 TDGQ13569 410 aa17.29■□□□□ 0.36
VRK3-221ENST00000600284 RAB33AQ14088 237 aa17.29■□□□□ 0.36
VRK3-221ENST00000600284 NOLC1Q14978 699 aaKnown RBP eCLIP17.29■□□□□ 0.36
VRK3-221ENST00000600284 UVSSAQ2YD98 709 aa17.29■□□□□ 0.36
VRK3-221ENST00000600284 CD300LGQ6UXG3 332 aa17.29■□□□□ 0.36
VRK3-221ENST00000600284 ANKS3Q6ZW76 656 aa17.29■□□□□ 0.36
VRK3-221ENST00000600284 NXPE3Q969Y0 559 aa17.29■□□□□ 0.36
VRK3-221ENST00000600284 INTS4Q96HW7 963 aaKnown RBP17.29■□□□□ 0.36
VRK3-221ENST00000600284 ZBTB45Q96K62 511 aaPredicted RBP17.29■□□□□ 0.36
VRK3-221ENST00000600284 KCNK12Q9HB15 430 aa17.29■□□□□ 0.36
VRK3-221ENST00000600284 MTRRQ9UBK8 725 aa17.29■□□□□ 0.36
VRK3-221ENST00000600284 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.29■□□□□ 0.36
VRK3-221ENST00000600284 BACE2Q9Y5Z0 518 aa17.29■□□□□ 0.36
VRK3-221ENST00000600284 MUC6Q6W4X9 2439 aa17.29■□□□□ 0.36
VRK3-221ENST00000600284 VPS37CA5D8V6 355 aaPredicted RBP17.28■□□□□ 0.36
VRK3-221ENST00000600284 N4BP1O75113 896 aaKnown RBP17.28■□□□□ 0.36
VRK3-221ENST00000600284 MYBP10242 640 aa17.28■□□□□ 0.36
VRK3-221ENST00000600284 AVPR2P30518 371 aa17.28■□□□□ 0.36
VRK3-221ENST00000600284 ABCD1P33897 745 aa17.28■□□□□ 0.36
VRK3-221ENST00000600284 ZNF131P52739 623 aa17.28■□□□□ 0.36
VRK3-221ENST00000600284 NHLH1Q02575 133 aa17.28■□□□□ 0.36
VRK3-221ENST00000600284 SOX4Q06945 474 aaPredicted RBP17.28■□□□□ 0.36
VRK3-221ENST00000600284 KYAT1Q16773 422 aa17.28■□□□□ 0.36
VRK3-221ENST00000600284 LIN9Q5TKA1 542 aa17.28■□□□□ 0.36
VRK3-221ENST00000600284 HAUS6Q7Z4H7 955 aa17.28■□□□□ 0.36
VRK3-221ENST00000600284 GPBP1Q86WP2 473 aa17.28■□□□□ 0.36
VRK3-221ENST00000600284 ZMAT2Q96NC0 199 aaKnown RBP17.28■□□□□ 0.36
VRK3-221ENST00000600284 CCSER1Q9C0I3 900 aa17.28■□□□□ 0.36
VRK3-221ENST00000600284 PLEKHA5Q9HAU0 1116 aa17.28■□□□□ 0.36
VRK3-221ENST00000600284 GOLGA2P5Q9HBQ8 144 aa17.28■□□□□ 0.36
VRK3-221ENST00000600284 BLOC1S4Q9NUP1 217 aa17.28■□□□□ 0.36
VRK3-221ENST00000600284 C2orf16Q68DN1 1984 aa17.28■□□□□ 0.36
VRK3-221ENST00000600284 NPHP3-ACAD11A0A0J9YXS1 232 aa17.27■□□□□ 0.36
VRK3-221ENST00000600284 PODXLO00592 558 aa17.27■□□□□ 0.36
VRK3-221ENST00000600284 POU2F2P09086 479 aa17.27■□□□□ 0.36
VRK3-221ENST00000600284 GBP2P32456 591 aaPredicted RBP17.27■□□□□ 0.36
VRK3-221ENST00000600284 OR1D2P34982 312 aa17.27■□□□□ 0.36
VRK3-221ENST00000600284 DDIT3P35638 169 aa17.27■□□□□ 0.36
VRK3-221ENST00000600284 PTPN5P54829 565 aa17.27■□□□□ 0.36
VRK3-221ENST00000600284 PPM1LQ5SGD2 360 aa17.27■□□□□ 0.36
VRK3-221ENST00000600284 IER5LQ5T953 404 aa17.27■□□□□ 0.36
VRK3-221ENST00000600284 RAD54LQ92698 747 aa17.27■□□□□ 0.36
VRK3-221ENST00000600284 REEP2Q9BRK0 252 aa17.27■□□□□ 0.36
VRK3-221ENST00000600284 BACH2Q9BYV9 841 aa17.27■□□□□ 0.36
VRK3-221ENST00000600284 PARVGQ9HBI0 331 aa17.27■□□□□ 0.36
VRK3-221ENST00000600284 ANKFY1Q9P2R3 1169 aa17.27■□□□□ 0.36
VRK3-221ENST00000600284 ZFP37Q9Y6Q3 630 aaPredicted RBP17.27■□□□□ 0.36
VRK3-221ENST00000600284 SYN3O14994 580 aa17.26■□□□□ 0.35
VRK3-221ENST00000600284 FAM13AO94988 1023 aa17.26■□□□□ 0.35
VRK3-221ENST00000600284 PIGRP01833 764 aa17.26■□□□□ 0.35
VRK3-221ENST00000600284 CLTAP09496 248 aa17.26■□□□□ 0.35
VRK3-221ENST00000600284 PLCG1P19174 1290 aa17.26■□□□□ 0.35
VRK3-221ENST00000600284 IGFBP6P24592 240 aaPredicted RBP17.26■□□□□ 0.35
VRK3-221ENST00000600284 TKTP29401 623 aaKnown RBP17.26■□□□□ 0.35
VRK3-221ENST00000600284 CACNB1Q02641 598 aaPredicted RBP17.26■□□□□ 0.35
VRK3-221ENST00000600284 GRIN1Q05586 938 aa17.26■□□□□ 0.35
VRK3-221ENST00000600284 KARSQ15046 597 aaKnown RBP17.26■□□□□ 0.35
VRK3-221ENST00000600284 PTPAQ15257 358 aa17.26■□□□□ 0.35
VRK3-221ENST00000600284 SLC10A6Q3KNW5 377 aa17.26■□□□□ 0.35
VRK3-221ENST00000600284 MYCT1Q8N699 235 aa17.26■□□□□ 0.35
VRK3-221ENST00000600284 C3orf58Q8NDZ4 430 aa17.26■□□□□ 0.35
VRK3-221ENST00000600284 RASSF8Q8NHQ8 419 aa17.26■□□□□ 0.35
VRK3-221ENST00000600284 LARP4BQ92615 738 aaKnown RBP17.26■□□□□ 0.35
VRK3-221ENST00000600284 TSPAN18Q96SJ8 248 aa17.26■□□□□ 0.35
VRK3-221ENST00000600284 IRF2BPLQ9H1B7 796 aa17.26■□□□□ 0.35
VRK3-221ENST00000600284 TBX20Q9UMR3 447 aa17.26■□□□□ 0.35
VRK3-221ENST00000600284 DUSP12Q9UNI6 340 aa17.26■□□□□ 0.35
VRK3-221ENST00000600284 MEFVO15553 781 aaPredicted RBP17.25■□□□□ 0.35
VRK3-221ENST00000600284 ADAM12O43184 909 aa17.25■□□□□ 0.35
VRK3-221ENST00000600284 TRAK2O60296 914 aa17.25■□□□□ 0.35
VRK3-221ENST00000600284 XYLBO75191 536 aa17.25■□□□□ 0.35
VRK3-221ENST00000600284 PDGFBP01127 241 aaPredicted RBP17.25■□□□□ 0.35
VRK3-221ENST00000600284 C8AP07357 584 aa17.25■□□□□ 0.35
VRK3-221ENST00000600284 HARSP12081 509 aaKnown RBP17.25■□□□□ 0.35
VRK3-221ENST00000600284 LAMP2P13473 410 aa17.25■□□□□ 0.35
VRK3-221ENST00000600284 SYT1P21579 422 aa17.25■□□□□ 0.35
VRK3-221ENST00000600284 BRCC3P46736 316 aa17.25■□□□□ 0.35
VRK3-221ENST00000600284 MCM6Q14566 821 aa17.25■□□□□ 0.35
VRK3-221ENST00000600284 AXDND1Q5T1B0 1012 aaPredicted RBP17.25■□□□□ 0.35
VRK3-221ENST00000600284 SLC8B1Q6J4K2 584 aa17.25■□□□□ 0.35
VRK3-221ENST00000600284 PRSS33Q8NF86 280 aa17.25■□□□□ 0.35
VRK3-221ENST00000600284 LRRC15Q8TF66 581 aa17.25■□□□□ 0.35
VRK3-221ENST00000600284 BICD1Q96G01 975 aa17.25■□□□□ 0.35
VRK3-221ENST00000600284 MYADMQ96S97 322 aa17.25■□□□□ 0.35
VRK3-221ENST00000600284 SMOC2Q9H3U7 446 aa17.25■□□□□ 0.35
VRK3-221ENST00000600284 NUB1Q9Y5A7 615 aa17.25■□□□□ 0.35
VRK3-221ENST00000600284 SRPRBQ9Y5M8 271 aaKnown RBP17.25■□□□□ 0.35
VRK3-221ENST00000600284 CDY1Q9Y6F8 540 aa17.25■□□□□ 0.35
VRK3-221ENST00000600284 MORC2Q9Y6X9 1032 aaPredicted RBP17.25■□□□□ 0.35
VRK3-221ENST00000600284 MYH11P35749 1972 aa17.24■□□□□ 0.35
VRK3-221ENST00000600284 TRIP11Q15643 1979 aa17.24■□□□□ 0.35
VRK3-221ENST00000600284 H7C4K7 107 aa17.24■□□□□ 0.35
VRK3-221ENST00000600284 KRT18P05783 430 aaKnown RBP17.24■□□□□ 0.35
VRK3-221ENST00000600284 MATR3P43243 847 aaKnown RBP eCLIP17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms