RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 RPTORQ8N122 1335 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 CYP26A1O43174 497 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 APOEP02649 317 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 GPC5P78333 572 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 COL9A3Q14050 684 aaPredicted RBP10.47□□□□□ -0.73
LIG3-216ENST00000593099 PPP2R5DQ14738 602 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 CC2D1AQ6P1N0 951 aaPredicted RBP10.47□□□□□ -0.73
LIG3-216ENST00000593099 CCNYQ8ND76 341 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 RPGRIP1Q96KN7 1286 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 SEPT5Q99719 369 aaPredicted RBP10.47□□□□□ -0.73
LIG3-216ENST00000593099 STMN4Q9H169 189 aaPredicted RBP10.47□□□□□ -0.73
LIG3-216ENST00000593099 C2CD2LO14523 706 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 ZBTB39O15060 712 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 ASGR1P07306 291 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 ALDH1A3P47895 512 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 KCNA10Q16322 511 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 MTHFD1LQ6UB35 978 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 YAF2Q8IY57 180 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 TMC2Q8TDI7 906 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 SNTG2Q9NY99 539 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 MORF4L1Q9UBU8 362 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 CARNS1A5YM72 827 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 PPP1R3GB7ZBB8 358 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 DYNC1I1O14576 645 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 ARL1P40616 181 aaPredicted RBP10.47□□□□□ -0.73
LIG3-216ENST00000593099 ETF1P62495 437 aaKnown RBP10.47□□□□□ -0.73
LIG3-216ENST00000593099 PCBP1Q15365 356 aaKnown RBP eCLIP10.47□□□□□ -0.73
LIG3-216ENST00000593099 TMC7Q7Z402 723 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 ZNF467Q7Z7K2 595 aaPredicted RBP10.47□□□□□ -0.73
LIG3-216ENST00000593099 SPATA24Q86W54 205 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 IFT20Q8IY31 132 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 SCFD1Q8WVM8 642 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 CGRRF1Q99675 332 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 FTHL17Q9BXU8 183 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.47□□□□□ -0.73
LIG3-216ENST00000593099 RAB17Q9H0T7 212 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 RSAD1Q9HA92 442 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 BLOC1S4Q9NUP1 217 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 COL20A1Q9P218 1284 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 ANAPC7Q9UJX3 599 aa10.47□□□□□ -0.73
LIG3-216ENST00000593099 XIRP1Q702N8 1843 aaKnown RBP10.47□□□□□ -0.73
LIG3-216ENST00000593099 TTC26A0AVF1 554 aa10.46□□□□□ -0.73
LIG3-216ENST00000593099 EIF3CLB5ME19 914 aaKnown RBP10.46□□□□□ -0.73
LIG3-216ENST00000593099 CAPN15O75808 1086 aa10.46□□□□□ -0.73
LIG3-216ENST00000593099 CDK17Q00537 523 aa10.46□□□□□ -0.73
LIG3-216ENST00000593099 PRPSAP1Q14558 356 aa10.46□□□□□ -0.73
LIG3-216ENST00000593099 SNX17Q15036 470 aa10.46□□□□□ -0.73
LIG3-216ENST00000593099 FAM102AQ5T9C2 384 aaPredicted RBP10.46□□□□□ -0.73
LIG3-216ENST00000593099 MTMR8Q96EF0 704 aa10.46□□□□□ -0.73
LIG3-216ENST00000593099 ZBED3Q96IU2 234 aaPredicted RBP10.46□□□□□ -0.73
LIG3-216ENST00000593099 EIF3CQ99613 913 aaKnown RBP10.46□□□□□ -0.73
LIG3-216ENST00000593099 ENTPD7Q9NQZ7 604 aa10.46□□□□□ -0.73
LIG3-216ENST00000593099 SOWAHDA6NJG2 315 aa10.46□□□□□ -0.73
LIG3-216ENST00000593099 WEE2P0C1S8 567 aa10.46□□□□□ -0.73
LIG3-216ENST00000593099 RBBP5Q15291 538 aaKnown RBP10.46□□□□□ -0.73
LIG3-216ENST00000593099 KIAA1755Q5JYT7 1200 aa10.46□□□□□ -0.73
LIG3-216ENST00000593099 RWDD4Q6NW29 188 aaKnown RBP10.46□□□□□ -0.73
LIG3-216ENST00000593099 DHX40Q8IX18 779 aaKnown RBP10.46□□□□□ -0.73
LIG3-216ENST00000593099 C17orf53Q8N3J3 647 aaPredicted RBP10.46□□□□□ -0.73
LIG3-216ENST00000593099 ACRBPQ8NEB7 543 aa10.46□□□□□ -0.73
LIG3-216ENST00000593099 ZNF512Q96ME7 567 aaPredicted RBP10.46□□□□□ -0.73
LIG3-216ENST00000593099 RNPEPQ9H4A4 650 aa10.46□□□□□ -0.73
LIG3-216ENST00000593099 ABHD10Q9NUJ1 306 aa10.46□□□□□ -0.73
LIG3-216ENST00000593099 MOXD2PA6NHM9 499 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 KRT10P13645 584 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 GTF2H1P32780 548 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 LMNB2Q03252 620 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 RNF219Q5W0B1 726 aaPredicted RBP10.46□□□□□ -0.74
LIG3-216ENST00000593099 PDXDC1Q6P996 788 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 ABHD15Q6UXT9 468 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 PPP1R13LQ8WUF5 828 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 HSD17B14Q9BPX1 270 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 CARD6Q9BX69 1037 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 MTMR12Q9C0I1 747 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 ASB7Q9H672 318 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 TXNRD2Q9NNW7 524 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 DSEQ9UL01 958 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 SNED1Q8TER0 1413 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 SPEF2Q9C093 1822 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 LYPLA2O95372 231 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 MYBL1P10243 752 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 UCHL3P15374 230 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 C1orf186Q6ZWK4 172 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 C18orf8Q96DM3 657 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 TMEM134Q9H6X4 195 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 RNF186Q9NXI6 227 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 NUP188Q5SRE5 1749 aa10.46□□□□□ -0.74
LIG3-216ENST00000593099 COL1A2P08123 1366 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 MCF2LO15068 1137 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 POMCP01189 267 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 LRG1P02750 347 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 CXCL8P10145 99 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 LCP1P13796 627 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 SMPD1P17405 629 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 BZW1Q7L1Q6 419 aaKnown RBP10.45□□□□□ -0.74
LIG3-216ENST00000593099 KCNK18Q7Z418 384 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 WDR49Q8IV35 697 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 MICALL1Q8N3F8 863 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 USP38Q8NB14 1042 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 SEZ6LQ9BYH1 1024 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms