RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 DZANK1Q9NVP4 752 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 ARHGAP28Q9P2N2 729 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 STK17AQ9UEE5 414 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 PRKAG3Q9UGI9 489 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 FBXO2Q9UK22 296 aaPredicted RBP8.88□□□□□ -0.99
VPS53-214ENST00000572607 USP20Q9Y2K6 914 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 GDAQ9Y2T3 454 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 PLXNA3P51805 1871 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 NPHP3-ACAD11A0A0J9YXS1 232 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 K7ENM7 598 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 MBTPS2O43462 519 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 CLASP2O75122 1294 aaKnown RBP8.87□□□□□ -0.99
VPS53-214ENST00000572607 ZSCAN22P10073 491 aaPredicted RBP8.87□□□□□ -0.99
VPS53-214ENST00000572607 MCF2P10911 925 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 DDIT3P35638 169 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 GRM5P41594 1212 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 STAT6P42226 847 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 NASPP49321 788 aaPredicted RBP8.87□□□□□ -0.99
VPS53-214ENST00000572607 ZP2Q05996 745 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 DSC1Q08554 894 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 COASYQ13057 564 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 TUSC3Q13454 348 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 MCM6Q14566 821 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 HSP90AA2PQ14568 343 aaPredicted RBP8.87□□□□□ -0.99
VPS53-214ENST00000572607 SLC39A14Q15043 492 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 SMAD2Q15796 467 aaKnown RBP8.87□□□□□ -0.99
VPS53-214ENST00000572607 TPRNQ4KMQ1 711 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 SPECC1Q5M775 1068 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 FOXD4L5Q5VV16 416 aaPredicted RBP8.87□□□□□ -0.99
VPS53-214ENST00000572607 EEF1DP3Q658K8 133 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 MPZL3Q6UWV2 235 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 ZPBP2Q6X784 338 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 SV2BQ7L1I2 683 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 ZBTB33Q86T24 672 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 SCUBE3Q8IX30 993 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 BCL7CQ8WUZ0 217 aaPredicted RBP8.87□□□□□ -0.99
VPS53-214ENST00000572607 FOXD4L4Q8WXT5 416 aaPredicted RBP8.87□□□□□ -0.99
VPS53-214ENST00000572607 SNX27Q96L92 541 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 ACO2Q99798 780 aaKnown RBP8.87□□□□□ -0.99
VPS53-214ENST00000572607 REEP2Q9BRK0 252 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 NTPCRQ9BSD7 190 aaKnown RBP8.87□□□□□ -0.99
VPS53-214ENST00000572607 TARS2Q9BW92 718 aaKnown RBP8.87□□□□□ -0.99
VPS53-214ENST00000572607 BLOC1S4Q9NUP1 217 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 MIOSQ9NXC5 875 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 CLEC1BQ9P126 229 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 ANKFY1Q9P2R3 1169 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 HCFC2Q9Y5Z7 792 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 IRAK3Q9Y616 596 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 MORC2Q9Y6X9 1032 aaPredicted RBP8.87□□□□□ -0.99
VPS53-214ENST00000572607 DCHS1Q96JQ0 3298 aa8.87□□□□□ -0.99
VPS53-214ENST00000572607 SF3B1O75533 1304 aaKnown RBP eCLIP8.86□□□□□ -0.99
VPS53-214ENST00000572607 CASTOR2A6NHX0 329 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 C2CD2LO14523 706 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 SPTLC2O15270 562 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 CLDN3O15551 220 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 TRAK2O60296 914 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 B4GALT3O60512 393 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 PPP6R2O75170 966 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 TOM1L1O75674 476 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 GLP2RO95838 553 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 F13A1P00488 732 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 EDN1P05305 212 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 MAPTP10636 758 aaKnown RBP8.86□□□□□ -0.99
VPS53-214ENST00000572607 HOXB8P17481 243 aaPredicted RBP8.86□□□□□ -0.99
VPS53-214ENST00000572607 KLRC2P26717 231 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 GLUD2P49448 558 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 LIG4P49917 911 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 NCKAP1LP55160 1127 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 OSTNP61366 133 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 CREMQ03060 361 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 NOLC1Q14978 699 aaKnown RBP eCLIP8.86□□□□□ -0.99
VPS53-214ENST00000572607 PTPN14Q15678 1187 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 KYAT1Q16773 422 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 PKDCCQ504Y2 493 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 ARSHQ5FYA8 562 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 CES5AQ6NT32 575 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 ANKRD54Q6NXT1 300 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 FUT10Q6P4F1 479 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 TMEM184AQ6ZMB5 413 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 HFE2Q6ZVN8 426 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 HAUS6Q7Z4H7 955 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 ADHFE1Q8IWW8 467 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 SMRP1Q8NCR6 262 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 TMEM161BQ8NDZ6 487 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 AUTS2Q8WXX7 1259 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 EPSTI1Q96J88 318 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 MSLNLQ96KJ4 702 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 UROC1Q96N76 676 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 CLIC6Q96NY7 704 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 ACAP3Q96P50 834 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 LRRC27Q9C0I9 530 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 SLC6A16Q9GZN6 736 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 CDT1Q9H211 546 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 SLC38A7Q9NVC3 462 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 MARCH5Q9NX47 278 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 DPP7Q9UHL4 492 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 ADAM28Q9UKQ2 775 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 CFAP45Q9UL16 551 aa8.86□□□□□ -0.99
VPS53-214ENST00000572607 PTGESO14684 152 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 HNRNPDLO14979 420 aaKnown RBP8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms