RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 CCL16O15467 120 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 MEFVO15553 781 aaPredicted RBP11.19□□□□□ -0.62
LDLR-214ENST00000560628 NARSO43776 548 aaKnown RBP11.19□□□□□ -0.62
LDLR-214ENST00000560628 C8AP07357 584 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 MAPTP10636 758 aaKnown RBP11.19□□□□□ -0.62
LDLR-214ENST00000560628 PROZP22891 400 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 TKTP29401 623 aaKnown RBP11.19□□□□□ -0.62
LDLR-214ENST00000560628 UBA7P41226 1012 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 MATR3P43243 847 aaKnown RBP eCLIP11.19□□□□□ -0.62
LDLR-214ENST00000560628 SF3A1Q15459 793 aaKnown RBP11.19□□□□□ -0.62
LDLR-214ENST00000560628 XKR4Q5GH76 650 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 PPM1LQ5SGD2 360 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 LIN9Q5TKA1 542 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.19□□□□□ -0.62
LDLR-214ENST00000560628 GET4Q7L5D6 327 aaPredicted RBP11.19□□□□□ -0.62
LDLR-214ENST00000560628 GRASPQ7Z6J2 395 aaPredicted RBP11.19□□□□□ -0.62
LDLR-214ENST00000560628 GPBP1Q86WP2 473 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 TMEM130Q8N3G9 435 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 SLC44A3Q8N4M1 653 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 TMEM105Q8N8V8 129 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 FLCNQ8NFG4 579 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 LRRC15Q8TF66 581 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 CALML4Q96GE6 196 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 DDX27Q96GQ7 796 aaKnown RBP11.19□□□□□ -0.62
LDLR-214ENST00000560628 SNX27Q96L92 541 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 UROC1Q96N76 676 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 PRRX2Q99811 253 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 RHOBTB2Q9BYZ6 727 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 IGSF9Q9P2J2 1179 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 FBXW11Q9UKB1 542 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 FBXL21Q9UKT6 434 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 POLIQ9UNA4 740 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 C2orf16Q68DN1 1984 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 VPS37CA5D8V6 355 aaPredicted RBP11.18□□□□□ -0.62
LDLR-214ENST00000560628 H0Y858 1186 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 PODXLO00592 558 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 TRAPPC3O43617 180 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 TOM1L1O75674 476 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 PAPLNO95428 1278 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 CFHP08603 1231 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 LAMP2P13473 410 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 KCNE1P15382 129 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 FSHRP23945 695 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 ARPP19P56211 112 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 SPAG1Q07617 926 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 RAB33AQ14088 237 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 MCM6Q14566 821 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 NOLC1Q14978 699 aaKnown RBP eCLIP11.18□□□□□ -0.62
LDLR-214ENST00000560628 KARSQ15046 597 aaKnown RBP11.18□□□□□ -0.62
LDLR-214ENST00000560628 SLC10A6Q3KNW5 377 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 AXDND1Q5T1B0 1012 aaPredicted RBP11.18□□□□□ -0.62
LDLR-214ENST00000560628 ASTLQ6HA08 431 aaPredicted RBP11.18□□□□□ -0.62
LDLR-214ENST00000560628 PDXDC1Q6P996 788 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 KCTD17Q8N5Z5 321 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 MYCT1Q8N699 235 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 RASSF8Q8NHQ8 419 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 SLC7A14Q8TBB6 771 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 BICD1Q96G01 975 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 AK8Q96MA6 479 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 HAPLN2Q9GZV7 340 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 ZHX3Q9H4I2 956 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 BLOC1S4Q9NUP1 217 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 SLC38A7Q9NVC3 462 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 FAM86C1Q9NVL1 165 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.18□□□□□ -0.626e-7■□□□□ 10.2
LDLR-214ENST00000560628 EPS15L1Q9UBC2 864 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 MTRRQ9UBK8 725 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 DAXXQ9UER7 740 aaPredicted RBP11.18□□□□□ -0.62
LDLR-214ENST00000560628 KCNG1Q9UIX4 513 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 DUSP12Q9UNI6 340 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 CDY1Q9Y6F8 540 aa11.18□□□□□ -0.62
LDLR-214ENST00000560628 STK25O00506 426 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 CLDN3O15551 220 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 PI15O43692 258 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 FAM13AO94988 1023 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 KRT18P05783 430 aaKnown RBP11.17□□□□□ -0.62
LDLR-214ENST00000560628 HNRNPA1P09651 372 aaKnown RBP eCLIP11.17□□□□□ -0.62
LDLR-214ENST00000560628 NPR3P17342 541 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 PLCG1P19174 1290 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 CUL4AQ13619 759 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 SPECC1Q5M775 1068 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 VARS2Q5ST30 1063 aaKnown RBP11.17□□□□□ -0.62
LDLR-214ENST00000560628 ZPBP2Q6X784 338 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 ANKS3Q6ZW76 656 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 HAUS6Q7Z4H7 955 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 BRAPQ7Z569 592 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 SIX5Q8N196 739 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 ITFG1Q8TB96 612 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 ATOH1Q92858 354 aaPredicted RBP11.17□□□□□ -0.62
LDLR-214ENST00000560628 REEP2Q9BRK0 252 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 RPP25Q9BUL9 199 aaKnown RBP11.17□□□□□ -0.62
LDLR-214ENST00000560628 FOXD4L1Q9NU39 408 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 HCFC1R1Q9NWW0 138 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 KCND2Q9NZV8 630 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 CNTN3Q9P232 1028 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 LARSQ9P2J5 1176 aaKnown RBP11.17□□□□□ -0.62
LDLR-214ENST00000560628 NUB1Q9Y5A7 615 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 BACE2Q9Y5Z0 518 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 CLIC4Q9Y696 253 aa11.17□□□□□ -0.62
LDLR-214ENST00000560628 SLC26A4O43511 780 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms