RNA–Protein interactions for RNA: ENST00000559831.5

TPM1-221, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-221ENST00000559831 LSM14BQ9BX40 385 aaKnown RBP11.29□□□□□ -0.6
TPM1-221ENST00000559831 MTMR12Q9C0I1 747 aa11.29□□□□□ -0.6
TPM1-221ENST00000559831 TMEM117Q9H0C3 514 aa11.29□□□□□ -0.6
TPM1-221ENST00000559831 CXCL16Q9H2A7 254 aa11.29□□□□□ -0.6
TPM1-221ENST00000559831 RSAD1Q9HA92 442 aa11.29□□□□□ -0.6
TPM1-221ENST00000559831 PLEKHA5Q9HAU0 1116 aa11.29□□□□□ -0.6
TPM1-221ENST00000559831 TMEM8AQ9HCN3 771 aa11.29□□□□□ -0.6
TPM1-221ENST00000559831 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.29□□□□□ -0.6
TPM1-221ENST00000559831 LRFN2Q9ULH4 789 aa11.29□□□□□ -0.6
TPM1-221ENST00000559831 ZMYND8Q9ULU4 1186 aaPredicted RBP11.29□□□□□ -0.6
TPM1-221ENST00000559831 FNDC1Q4ZHG4 1894 aaPredicted RBP11.28□□□□□ -0.6
TPM1-221ENST00000559831 ATF7P17544 494 aaPredicted RBP11.28□□□□□ -0.6
TPM1-221ENST00000559831 GTF2H1P32780 548 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 PIK3CAP42336 1068 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 GUCY2FP51841 1108 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 AP3M2P53677 418 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 CETN1Q12798 172 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 PPIGQ13427 754 aaKnown RBP eCLIP11.28□□□□□ -0.62e-10■■□□□ 11.9
TPM1-221ENST00000559831 IKBKEQ14164 716 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 EXOC3L4Q17RC7 722 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 DUOXA2Q1HG44 320 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 KRT39Q6A163 491 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 GBP6Q6ZN66 633 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 AGMOQ6ZNB7 445 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 VSTM4Q8IW00 320 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 TMEM130Q8N3G9 435 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 CACTINQ8WUQ7 758 aaKnown RBP11.28□□□□□ -0.6
TPM1-221ENST00000559831 ZFP42Q96MM3 310 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 GAD1Q99259 594 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 ASB7Q9H672 318 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 IL23AQ9NPF7 189 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 GCNT4Q9P109 453 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 CNTN3Q9P232 1028 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 INPP5FQ9Y2H2 1132 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 GIT1Q9Y2X7 761 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 PCDHB7Q9Y5E2 793 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 PTPRSQ13332 1948 aa11.28□□□□□ -0.6
TPM1-221ENST00000559831 SCN1AP35498 2009 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.27□□□□□ -0.61
TPM1-221ENST00000559831 A0A1W2PQC6 194 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 P4HA2O15460 535 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 HLA-DRAP01903 254 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 C4BPAP04003 597 aaKnown RBP11.27□□□□□ -0.61
TPM1-221ENST00000559831 PFKMP08237 780 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 KRT19P08727 400 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 ACTN1P12814 892 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 CDC25BP30305 580 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 PBX1P40424 430 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 SCNN1GP51170 649 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 MCCD1P59942 119 aaPredicted RBP11.27□□□□□ -0.61
TPM1-221ENST00000559831 CLDN10P78369 228 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 FPGSQ05932 587 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 KCNMA1Q12791 1236 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 TDRD10Q5VZ19 366 aaKnown RBP11.27□□□□□ -0.61
TPM1-221ENST00000559831 ALKAL1Q6UXT8 129 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 SV2AQ7L0J3 742 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.27□□□□□ -0.61
TPM1-221ENST00000559831 ZNF598Q86UK7 904 aaKnown RBP11.27□□□□□ -0.61
TPM1-221ENST00000559831 FBXL13Q8NEE6 735 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 HELQQ8TDG4 1101 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 TAS1R2Q8TE23 839 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 C18orf25Q96B23 403 aaPredicted RBP11.27□□□□□ -0.61
TPM1-221ENST00000559831 VWCEQ96DN2 955 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 ZMAT2Q96NC0 199 aaKnown RBP11.27□□□□□ -0.61
TPM1-221ENST00000559831 ERGIC2Q96RQ1 377 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 INTS2Q9H0H0 1204 aaKnown RBP11.27□□□□□ -0.61
TPM1-221ENST00000559831 UBN1Q9NPG3 1134 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 TMEM161AQ9NX61 479 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 TUBGCP4Q9UGJ1 667 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 DERAQ9Y315 318 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 C2CD2Q9Y426 696 aa11.27□□□□□ -0.61
TPM1-221ENST00000559831 SMIM28A0A1B0GU29 152 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 GTPBP10A4D1E9 387 aaKnown RBP11.26□□□□□ -0.61
TPM1-221ENST00000559831 ARL5CA6NH57 179 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 XPOTO43592 962 aaKnown RBP11.26□□□□□ -0.61
TPM1-221ENST00000559831 UPP2O95045 317 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 VNN1O95497 513 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 EOMESO95936 686 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 POMCP01189 267 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 FGFR1P11362 822 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 SLC9A1P19634 815 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 PON1P27169 355 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 FAM189BP81408 668 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 APBA1Q02410 837 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 LRMPQ12912 555 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 TRPC3Q13507 836 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 ZACNQ401N2 412 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 EPC2Q52LR7 807 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 SPECC1LQ69YQ0 1117 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 GLB1LQ6UWU2 654 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.26□□□□□ -0.61
TPM1-221ENST00000559831 C15orf39Q6ZRI6 1047 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 FAM43BQ6ZT52 329 aaPredicted RBP11.26□□□□□ -0.61
TPM1-221ENST00000559831 TRAPPC11Q7Z392 1133 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 NT5DC4Q86YG4 428 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 EHBP1Q8NDI1 1231 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 BEST2Q8NFU1 509 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 NEK11Q8NG66 645 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 SEMA4DQ92854 862 aa11.26□□□□□ -0.61
TPM1-221ENST00000559831 ELMO3Q96BJ8 720 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms