RNA–Protein interactions for RNA: ENST00000558072.5

TPM1-209, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-209ENST00000558072 LRFN2Q9ULH4 789 aa13.42□□□□□ -0.26
TPM1-209ENST00000558072 UBQLN1Q9UMX0 589 aaKnown RBP13.42□□□□□ -0.26
TPM1-209ENST00000558072 NR2E3Q9Y5X4 410 aa13.42□□□□□ -0.26
TPM1-209ENST00000558072 LRRIQ3A6PVS8 624 aaPredicted RBP13.41□□□□□ -0.26
TPM1-209ENST00000558072 C9IYK1 514 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 NRDCO43847 1150 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 CXCL8P10145 99 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 KCNE1P15382 129 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 ATF7P17544 494 aaPredicted RBP13.41□□□□□ -0.26
TPM1-209ENST00000558072 OSTNP61366 133 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 TRPC3Q13507 836 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 TMEM132DQ14C87 1099 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 XKR4Q5GH76 650 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 FIGNQ5HY92 759 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 WDR44Q5JSH3 913 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 ZBTB41Q5SVQ8 909 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 GLB1LQ6UWU2 654 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 PPFIBP1Q86W92 1011 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 ECHDC2Q86YB7 292 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 TMEM130Q8N3G9 435 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 CEP120Q8N960 986 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 FBXL13Q8NEE6 735 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 URGCPQ8TCY9 931 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 TAF4BQ92750 862 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 SNX27Q96L92 541 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 LBHD1Q9BQE6 289 aaPredicted RBP13.41□□□□□ -0.26
TPM1-209ENST00000558072 EIF2AQ9BY44 585 aaKnown RBP13.41□□□□□ -0.26
TPM1-209ENST00000558072 DNAI2Q9GZS0 605 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 NUCKS1Q9H1E3 243 aaKnown RBP13.41□□□□□ -0.26
TPM1-209ENST00000558072 FAM124BQ9H5Z6 455 aaPredicted RBP13.41□□□□□ -0.26
TPM1-209ENST00000558072 PDE11AQ9HCR9 933 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 RNF19AQ9NV58 838 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 INTS13Q9NVM9 706 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 CNTN3Q9P232 1028 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 ITGA11Q9UKX5 1188 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 COQ4Q9Y3A0 265 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 PCDHB7Q9Y5E2 793 aa13.41□□□□□ -0.26
TPM1-209ENST00000558072 MICAL3Q7RTP6 2002 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 LACTBL1A8MY62 500 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 TULP1O00294 542 aaPredicted RBP13.4□□□□□ -0.26
TPM1-209ENST00000558072 ENPP3O14638 875 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 RECQL4O94761 1208 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 P4HA1P13674 534 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 ATICP31939 592 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 PNPLA4P41247 253 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 TNFSF9P41273 254 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 GSDMDP57764 484 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 BIRC3Q13489 604 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 TSR1Q2NL82 804 aaKnown RBP13.4□□□□□ -0.26
TPM1-209ENST00000558072 SLC10A6Q3KNW5 377 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 ZACNQ401N2 412 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 ALKAL1Q6UXT8 129 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 C16orf59Q7L2K0 433 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 ENOSF1Q7L5Y1 443 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 RTN4RL1Q86UN2 441 aaPredicted RBP13.4□□□□□ -0.26
TPM1-209ENST00000558072 NPAS4Q8IUM7 802 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 VSTM4Q8IW00 320 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 ABI1Q8IZP0 508 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 SMG8Q8ND04 991 aaKnown RBP13.4□□□□□ -0.26
TPM1-209ENST00000558072 NEK11Q8NG66 645 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 KIF12Q96FN5 646 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 FAM84AQ96KN4 292 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 NAP1L5Q96NT1 182 aaPredicted RBP13.4□□□□□ -0.26
TPM1-209ENST00000558072 CXCL16Q9H2A7 254 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 NXF3Q9H4D5 531 aaKnown RBP13.4□□□□□ -0.26
TPM1-209ENST00000558072 RSAD1Q9HA92 442 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 IL23AQ9NPF7 189 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 PLCB1Q9NQ66 1216 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 FBXL5Q9UKA1 691 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 HES2Q9Y543 173 aa13.4□□□□□ -0.26
TPM1-209ENST00000558072 ARHGEF37A1IGU5 675 aa13.39□□□□□ -0.27
TPM1-209ENST00000558072 MEIS3P2A8K0S8 358 aa13.39□□□□□ -0.27
TPM1-209ENST00000558072 INPPL1O15357 1258 aa13.39□□□□□ -0.27
TPM1-209ENST00000558072 AMHP03971 560 aa13.39□□□□□ -0.27
TPM1-209ENST00000558072 C4BPAP04003 597 aaKnown RBP13.39□□□□□ -0.27
TPM1-209ENST00000558072 THP07101 528 aa13.39□□□□□ -0.27
TPM1-209ENST00000558072 CCDC172P0C7W6 258 aa13.39□□□□□ -0.27
TPM1-209ENST00000558072 TRIM21P19474 475 aaKnown RBP13.39□□□□□ -0.27
TPM1-209ENST00000558072 MAGEA10P43363 369 aaPredicted RBP13.39□□□□□ -0.27
TPM1-209ENST00000558072 GCLMP48507 274 aa13.39□□□□□ -0.27
TPM1-209ENST00000558072 RBP5P82980 135 aa13.39□□□□□ -0.27
TPM1-209ENST00000558072 TFAMQ00059 246 aaKnown RBP13.39□□□□□ -0.27
TPM1-209ENST00000558072 FPGSQ05932 587 aa13.39□□□□□ -0.27
TPM1-209ENST00000558072 SGSM1Q2NKQ1 1148 aa13.39□□□□□ -0.27
TPM1-209ENST00000558072 PSRC1Q6PGN9 363 aaPredicted RBP13.39□□□□□ -0.27
TPM1-209ENST00000558072 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.39□□□□□ -0.27
TPM1-209ENST00000558072 SV2AQ7L0J3 742 aa13.39□□□□□ -0.27
TPM1-209ENST00000558072 TMEM192Q8IY95 271 aa13.39□□□□□ -0.27
TPM1-209ENST00000558072 TTC39CQ8N584 583 aa13.39□□□□□ -0.27
TPM1-209ENST00000558072 EHBP1Q8NDI1 1231 aa13.39□□□□□ -0.27
TPM1-209ENST00000558072 LPPQ93052 612 aa13.39□□□□□ -0.27
TPM1-209ENST00000558072 JAKMIP2Q96AA8 810 aa13.39□□□□□ -0.27
TPM1-209ENST00000558072 DDX27Q96GQ7 796 aaKnown RBP13.39□□□□□ -0.27
TPM1-209ENST00000558072 UROC1Q96N76 676 aa13.39□□□□□ -0.27
TPM1-209ENST00000558072 APOL6Q9BWW8 343 aa13.39□□□□□ -0.27
TPM1-209ENST00000558072 MRPL9Q9BYD2 267 aaKnown RBP13.39□□□□□ -0.27
TPM1-209ENST00000558072 TMEM117Q9H0C3 514 aa13.39□□□□□ -0.27
TPM1-209ENST00000558072 MMRN2Q9H8L6 949 aa13.39□□□□□ -0.27
TPM1-209ENST00000558072 RAB20Q9NX57 234 aa13.39□□□□□ -0.27
TPM1-209ENST00000558072 GCNT4Q9P109 453 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms