RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 STAMQ92783 540 aa21.06■□□□□ 0.96
PTCH1-227ENST00000553256 C18orf25Q96B23 403 aaPredicted RBP21.06■□□□□ 0.96
PTCH1-227ENST00000553256 HVCN1Q96D96 273 aa21.06■□□□□ 0.96
PTCH1-227ENST00000553256 PLEKHA5Q9HAU0 1116 aa21.06■□□□□ 0.96
PTCH1-227ENST00000553256 FNIP2Q9P278 1114 aa21.06■□□□□ 0.96
PTCH1-227ENST00000553256 CDH22Q9UJ99 828 aa21.06■□□□□ 0.96
PTCH1-227ENST00000553256 CPSF3Q9UKF6 684 aaKnown RBP21.06■□□□□ 0.96
PTCH1-227ENST00000553256 VWA8A3KMH1 1905 aa21.06■□□□□ 0.96
PTCH1-227ENST00000553256 SF3B1O75533 1304 aaKnown RBP eCLIP21.05■□□□□ 0.964e-7■■■■■ 133.7
PTCH1-227ENST00000553256 PDCD11Q14690 1871 aaKnown RBP21.05■□□□□ 0.96
PTCH1-227ENST00000553256 FAM237AA0A1B0GTK4 181 aa21.05■□□□□ 0.96
PTCH1-227ENST00000553256 HNRNPDLO14979 420 aaKnown RBP21.05■□□□□ 0.96
PTCH1-227ENST00000553256 OGTO15294 1046 aa21.05■□□□□ 0.96
PTCH1-227ENST00000553256 URODP06132 367 aa21.05■□□□□ 0.96
PTCH1-227ENST00000553256 CXCL8P10145 99 aa21.05■□□□□ 0.96
PTCH1-227ENST00000553256 HARSP12081 509 aaKnown RBP21.05■□□□□ 0.96
PTCH1-227ENST00000553256 FGFR3P22607 806 aa21.05■□□□□ 0.96
PTCH1-227ENST00000553256 LIG4P49917 911 aa21.05■□□□□ 0.96
PTCH1-227ENST00000553256 YARSP54577 528 aaKnown RBP21.05■□□□□ 0.96
PTCH1-227ENST00000553256 BMS1Q14692 1282 aaKnown RBP21.05■□□□□ 0.96
PTCH1-227ENST00000553256 CBX2Q14781 532 aaPredicted RBP21.05■□□□□ 0.96
PTCH1-227ENST00000553256 CRELD2Q6UXH1 353 aaPredicted RBP21.05■□□□□ 0.96
PTCH1-227ENST00000553256 GJD3Q8N144 294 aa21.05■□□□□ 0.96
PTCH1-227ENST00000553256 LNX1Q8TBB1 728 aaPredicted RBP21.05■□□□□ 0.96
PTCH1-227ENST00000553256 HASPINQ8TF76 798 aa21.05■□□□□ 0.96
PTCH1-227ENST00000553256 PIK3R5Q8WYR1 880 aa21.05■□□□□ 0.96
PTCH1-227ENST00000553256 UROC1Q96N76 676 aa21.05■□□□□ 0.96
PTCH1-227ENST00000553256 C7orf25Q9BPX7 421 aa21.05■□□□□ 0.96
PTCH1-227ENST00000553256 ZHX3Q9H4I2 956 aa21.05■□□□□ 0.96
PTCH1-227ENST00000553256 FAM50BQ9Y247 325 aa21.05■□□□□ 0.96
PTCH1-227ENST00000553256 HPSEQ9Y251 543 aa21.05■□□□□ 0.96
PTCH1-227ENST00000553256 CITO14578 2027 aa21.04■□□□□ 0.96
PTCH1-227ENST00000553256 LOC730098B7Z3J9 87 aa21.04■□□□□ 0.96
PTCH1-227ENST00000553256 TADA2AO75478 443 aa21.04■□□□□ 0.96
PTCH1-227ENST00000553256 MYBP10242 640 aa21.04■□□□□ 0.96
PTCH1-227ENST00000553256 HOXD13P35453 343 aa21.04■□□□□ 0.96
PTCH1-227ENST00000553256 KANK3Q6NY19 840 aa21.04■□□□□ 0.96
PTCH1-227ENST00000553256 PPFIBP1Q86W92 1011 aa21.04■□□□□ 0.96
PTCH1-227ENST00000553256 IQUBQ8NA54 791 aa21.04■□□□□ 0.96
PTCH1-227ENST00000553256 GLIS3Q8NEA6 775 aa21.04■□□□□ 0.96
PTCH1-227ENST00000553256 DHX58Q96C10 678 aa21.04■□□□□ 0.96
PTCH1-227ENST00000553256 EMILIN2Q9BXX0 1053 aa21.04■□□□□ 0.96
PTCH1-227ENST00000553256 ADAM7Q9H2U9 754 aa21.04■□□□□ 0.96
PTCH1-227ENST00000553256 SSX2IPQ9Y2D8 614 aa21.04■□□□□ 0.96
PTCH1-227ENST00000553256 TRIOO75962 3097 aa21.04■□□□□ 0.96
PTCH1-227ENST00000553256 C2CD2LO14523 706 aa21.03■□□□□ 0.96
PTCH1-227ENST00000553256 POLR2DO15514 142 aaKnown RBP21.03■□□□□ 0.96
PTCH1-227ENST00000553256 ME1P48163 572 aa21.03■□□□□ 0.96
PTCH1-227ENST00000553256 L1TD1Q5T7N2 865 aaKnown RBP21.03■□□□□ 0.96
PTCH1-227ENST00000553256 C12orf76Q8N812 135 aaPredicted RBP21.03■□□□□ 0.96
PTCH1-227ENST00000553256 CLSTN3Q9BQT9 956 aa21.03■□□□□ 0.96
PTCH1-227ENST00000553256 SLC38A7Q9NVC3 462 aa21.03■□□□□ 0.96
PTCH1-227ENST00000553256 PANK4Q9NVE7 773 aa21.03■□□□□ 0.96
PTCH1-227ENST00000553256 DZANK1Q9NVP4 752 aa21.03■□□□□ 0.96
PTCH1-227ENST00000553256 TBC1D7Q9P0N9 293 aa21.03■□□□□ 0.96
PTCH1-227ENST00000553256 TUBGCP4Q9UGJ1 667 aa21.03■□□□□ 0.96
PTCH1-227ENST00000553256 LACTBL1A8MY62 500 aa21.02■□□□□ 0.96
PTCH1-227ENST00000553256 ACTN4O43707 911 aaKnown RBP21.02■□□□□ 0.96
PTCH1-227ENST00000553256 TBC1D4O60343 1298 aa21.02■□□□□ 0.96
PTCH1-227ENST00000553256 B3GAT3O94766 335 aa21.02■□□□□ 0.96
PTCH1-227ENST00000553256 SRGAP2BP0DMP2 458 aa21.02■□□□□ 0.96
PTCH1-227ENST00000553256 LRPAP1P30533 357 aa21.02■□□□□ 0.96
PTCH1-227ENST00000553256 POU5F1Q01860 360 aaKnown RBP21.02■□□□□ 0.96
PTCH1-227ENST00000553256 KYAT1Q16773 422 aa21.02■□□□□ 0.96
PTCH1-227ENST00000553256 HERC4Q5GLZ8 1057 aaPredicted RBP21.02■□□□□ 0.96
PTCH1-227ENST00000553256 FAM171A1Q5VUB5 890 aa21.02■□□□□ 0.96
PTCH1-227ENST00000553256 ADALQ6DHV7 355 aa21.02■□□□□ 0.96
PTCH1-227ENST00000553256 PRSS55Q6UWB4 352 aaPredicted RBP21.02■□□□□ 0.96
PTCH1-227ENST00000553256 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.02■□□□□ 0.96
PTCH1-227ENST00000553256 EPM2AIP1Q7L775 607 aaPredicted RBP21.02■□□□□ 0.96
PTCH1-227ENST00000553256 RIN2Q8WYP3 895 aaPredicted RBP21.02■□□□□ 0.96
PTCH1-227ENST00000553256 HPS3Q969F9 1004 aa21.02■□□□□ 0.96
PTCH1-227ENST00000553256 BICD1Q96G01 975 aa21.02■□□□□ 0.96
PTCH1-227ENST00000553256 DDX27Q96GQ7 796 aaKnown RBP21.02■□□□□ 0.96
PTCH1-227ENST00000553256 FBXL18Q96ME1 805 aa21.02■□□□□ 0.96
PTCH1-227ENST00000553256 TTPALQ9BTX7 342 aa21.02■□□□□ 0.96
PTCH1-227ENST00000553256 MRPL44Q9H9J2 332 aaKnown RBP21.02■□□□□ 0.96
PTCH1-227ENST00000553256 MAGEF1Q9HAY2 307 aa21.02■□□□□ 0.96
PTCH1-227ENST00000553256 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.02■□□□□ 0.96
PTCH1-227ENST00000553256 PLXNA3P51805 1871 aa21.02■□□□□ 0.96
PTCH1-227ENST00000553256 PODXLO00592 558 aa21.01■□□□□ 0.95
PTCH1-227ENST00000553256 ADAM12O43184 909 aa21.01■□□□□ 0.95
PTCH1-227ENST00000553256 CMA1P23946 247 aa21.01■□□□□ 0.95
PTCH1-227ENST00000553256 KLRC2P26717 231 aa21.01■□□□□ 0.95
PTCH1-227ENST00000553256 RPL9P32969 192 aaKnown RBP21.01■□□□□ 0.95
PTCH1-227ENST00000553256 BRCC3P46736 316 aa21.01■□□□□ 0.95
PTCH1-227ENST00000553256 ITIH3Q06033 890 aa21.01■□□□□ 0.95
PTCH1-227ENST00000553256 ELAVL2Q12926 359 aaKnown RBP21.01■□□□□ 0.95
PTCH1-227ENST00000553256 RSPO2Q6UXX9 243 aaPredicted RBP21.01■□□□□ 0.95
PTCH1-227ENST00000553256 ZSWIM2Q8NEG5 633 aa21.01■□□□□ 0.95
PTCH1-227ENST00000553256 CMASQ8NFW8 434 aaPredicted RBP21.01■□□□□ 0.95
PTCH1-227ENST00000553256 PHF7Q9BWX1 381 aaPredicted RBP21.01■□□□□ 0.95
PTCH1-227ENST00000553256 RHOBTB2Q9BYZ6 727 aa21.01■□□□□ 0.95
PTCH1-227ENST00000553256 KCNH3Q9ULD8 1083 aa21.01■□□□□ 0.95
PTCH1-227ENST00000553256 PI4K2BG5E9Z4 385 aa21■□□□□ 0.95
PTCH1-227ENST00000553256 TGM5O43548 720 aa21■□□□□ 0.95
PTCH1-227ENST00000553256 ADH1AP07327 375 aa21■□□□□ 0.95
PTCH1-227ENST00000553256 IDEP14735 1019 aa21■□□□□ 0.95
PTCH1-227ENST00000553256 RPL17P18621 184 aaKnown RBP21■□□□□ 0.95
PTCH1-227ENST00000553256 CYP3A5P20815 502 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms