RNA–Protein interactions for RNA: ENST00000513678.5

MATR3-222, Transcript of matrin 3, human

TSL 2

Gene MATR3, Length 444 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-222	ENST00000513678	MCF2	P10911	925 aa		18.42	■□□□□ 0.54
MATR3-222	ENST00000513678	CLCNKB	P51801	687 aa		18.42	■□□□□ 0.54
MATR3-222	ENST00000513678	NUBP1	P53384	320 aa		18.42	■□□□□ 0.54
MATR3-222	ENST00000513678	SOX4	Q06945	474 aa	Predicted RBP	18.42	■□□□□ 0.54
MATR3-222	ENST00000513678	PTPA	Q15257	358 aa		18.42	■□□□□ 0.54
MATR3-222	ENST00000513678	UPP1	Q16831	310 aa		18.42	■□□□□ 0.54
MATR3-222	ENST00000513678	ARSH	Q5FYA8	562 aa		18.42	■□□□□ 0.54
MATR3-222	ENST00000513678	DCLRE1A	Q6PJP8	1040 aa		18.42	■□□□□ 0.54
MATR3-222	ENST00000513678	ZPBP2	Q6X784	338 aa		18.42	■□□□□ 0.54
MATR3-222	ENST00000513678	C3orf58	Q8NDZ4	430 aa		18.42	■□□□□ 0.54
MATR3-222	ENST00000513678	MYADM	Q96S97	322 aa		18.42	■□□□□ 0.54
MATR3-222	ENST00000513678	CCDC94	Q9BW85	323 aa	Predicted RBP	18.42	■□□□□ 0.54
MATR3-222	ENST00000513678	GOLGA2P5	Q9HBQ8	144 aa		18.42	■□□□□ 0.54
MATR3-222	ENST00000513678	LARS	Q9P2J5	1176 aa	Known RBP	18.42	■□□□□ 0.54
MATR3-222	ENST00000513678	MTRR	Q9UBK8	725 aa		18.42	■□□□□ 0.54
MATR3-222	ENST00000513678	TRIP11	Q15643	1979 aa		18.41	■□□□□ 0.54
MATR3-222	ENST00000513678	SFI1	A8K8P3	1242 aa		18.41	■□□□□ 0.54
MATR3-222	ENST00000513678		H0YCG3	227 aa		18.41	■□□□□ 0.54
MATR3-222	ENST00000513678		K7ELQ4	463 aa	Predicted RBP	18.41	■□□□□ 0.54
MATR3-222	ENST00000513678	SLC16A4	O15374	487 aa		18.41	■□□□□ 0.54
MATR3-222	ENST00000513678	MEFV	O15553	781 aa	Predicted RBP	18.41	■□□□□ 0.54
MATR3-222	ENST00000513678	B3GAT3	O94766	335 aa		18.41	■□□□□ 0.54
MATR3-222	ENST00000513678	MAPT	P10636	758 aa	Known RBP	18.41	■□□□□ 0.54
MATR3-222	ENST00000513678	KCNE1	P15382	129 aa		18.41	■□□□□ 0.54
MATR3-222	ENST00000513678	HOXA9	P31269	272 aa		18.41	■□□□□ 0.54
MATR3-222	ENST00000513678	MRE11	P49959	708 aa		18.41	■□□□□ 0.54
MATR3-222	ENST00000513678	ZNF131	P52739	623 aa		18.41	■□□□□ 0.54
MATR3-222	ENST00000513678	YARS	P54577	528 aa	Known RBP	18.41	■□□□□ 0.54
MATR3-222	ENST00000513678	REST	Q13127	1097 aa		18.41	■□□□□ 0.54
MATR3-222	ENST00000513678	MPZL3	Q6UWV2	235 aa		18.41	■□□□□ 0.54
MATR3-222	ENST00000513678	CEP57	Q86XR8	500 aa		18.41	■□□□□ 0.54
MATR3-222	ENST00000513678	ZMAT2	Q96NC0	199 aa	Known RBP	18.41	■□□□□ 0.54
MATR3-222	ENST00000513678	CCSER1	Q9C0I3	900 aa		18.41	■□□□□ 0.54
MATR3-222	ENST00000513678	BLOC1S4	Q9NUP1	217 aa		18.41	■□□□□ 0.54
MATR3-222	ENST00000513678	CNTN3	Q9P232	1028 aa		18.41	■□□□□ 0.54
MATR3-222	ENST00000513678	USP34	Q70CQ2	3546 aa		18.41	■□□□□ 0.54
MATR3-222	ENST00000513678	TOM1L1	O75674	476 aa		18.4	■□□□□ 0.54
MATR3-222	ENST00000513678	POU2F2	P09086	479 aa		18.4	■□□□□ 0.54
MATR3-222	ENST00000513678	HNRNPA1	P09651	372 aa	Known RBP eCLIP	18.4	■□□□□ 0.54
MATR3-222	ENST00000513678	GBP2	P32456	591 aa	Predicted RBP	18.4	■□□□□ 0.54
MATR3-222	ENST00000513678	NCKAP1L	P55160	1127 aa		18.4	■□□□□ 0.54
MATR3-222	ENST00000513678	GRIN1	Q05586	938 aa		18.4	■□□□□ 0.54
MATR3-222	ENST00000513678	STRN3	Q13033	797 aa		18.4	■□□□□ 0.54
MATR3-222	ENST00000513678	RAB33A	Q14088	237 aa		18.4	■□□□□ 0.54
MATR3-222	ENST00000513678	TMEM105	Q8N8V8	129 aa		18.4	■□□□□ 0.54
MATR3-222	ENST00000513678	LRRC15	Q8TF66	581 aa		18.4	■□□□□ 0.54
MATR3-222	ENST00000513678	SNX21	Q969T3	373 aa		18.4	■□□□□ 0.54
MATR3-222	ENST00000513678	PLIN2	Q99541	437 aa		18.4	■□□□□ 0.54
MATR3-222	ENST00000513678	SLC38A7	Q9NVC3	462 aa		18.4	■□□□□ 0.54
MATR3-222	ENST00000513678	C8A	P07357	584 aa		18.39	■□□□□ 0.53
MATR3-222	ENST00000513678	PLCG1	P19174	1290 aa		18.39	■□□□□ 0.53
MATR3-222	ENST00000513678	OSTN	P61366	133 aa		18.39	■□□□□ 0.53
MATR3-222	ENST00000513678	RAD51AP2	Q09MP3	1159 aa		18.39	■□□□□ 0.53
MATR3-222	ENST00000513678	LIN9	Q5TKA1	542 aa		18.39	■□□□□ 0.53
MATR3-222	ENST00000513678	CWF19L1	Q69YN2	538 aa	Known RBP	18.39	■□□□□ 0.53
MATR3-222	ENST00000513678	RSPO2	Q6UXX9	243 aa	Predicted RBP	18.39	■□□□□ 0.53
MATR3-222	ENST00000513678	RAD54L	Q92698	747 aa		18.39	■□□□□ 0.53
MATR3-222	ENST00000513678	DDX27	Q96GQ7	796 aa	Known RBP	18.39	■□□□□ 0.53
MATR3-222	ENST00000513678	ZBTB45	Q96K62	511 aa	Predicted RBP	18.39	■□□□□ 0.53
MATR3-222	ENST00000513678	PHOX2B	Q99453	314 aa		18.39	■□□□□ 0.53
MATR3-222	ENST00000513678	REEP2	Q9BRK0	252 aa		18.39	■□□□□ 0.53
MATR3-222	ENST00000513678	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	18.39	■□□□□ 0.53
MATR3-222	ENST00000513678	PIDD1	Q9HB75	910 aa		18.39	■□□□□ 0.53
MATR3-222	ENST00000513678	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	18.39	■□□□□ 0.53	6e-12	■□□□□ 10.5
MATR3-222	ENST00000513678	MTMR6	Q9Y217	621 aa		18.39	■□□□□ 0.53
MATR3-222	ENST00000513678	SRPRB	Q9Y5M8	271 aa	Known RBP	18.39	■□□□□ 0.53
MATR3-222	ENST00000513678	BACE2	Q9Y5Z0	518 aa		18.39	■□□□□ 0.53
MATR3-222	ENST00000513678	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	18.39	■□□□□ 0.53
MATR3-222	ENST00000513678	MYO15A	Q9UKN7	3530 aa		18.38	■□□□□ 0.53
MATR3-222	ENST00000513678	LAMP2	P13473	410 aa		18.38	■□□□□ 0.53
MATR3-222	ENST00000513678	TKT	P29401	623 aa	Known RBP	18.38	■□□□□ 0.53
MATR3-222	ENST00000513678	ABCD1	P33897	745 aa		18.38	■□□□□ 0.53
MATR3-222	ENST00000513678	BRCC3	P46736	316 aa		18.38	■□□□□ 0.53
MATR3-222	ENST00000513678	MCL1	Q07820	350 aa		18.38	■□□□□ 0.53
MATR3-222	ENST00000513678	NOLC1	Q14978	699 aa	Known RBP eCLIP	18.38	■□□□□ 0.53
MATR3-222	ENST00000513678	ASTL	Q6HA08	431 aa	Predicted RBP	18.38	■□□□□ 0.53
MATR3-222	ENST00000513678	GET4	Q7L5D6	327 aa	Predicted RBP	18.38	■□□□□ 0.53
MATR3-222	ENST00000513678	GPBP1	Q86WP2	473 aa		18.38	■□□□□ 0.53
MATR3-222	ENST00000513678	RSAD2	Q8WXG1	361 aa		18.38	■□□□□ 0.53
MATR3-222	ENST00000513678	NXPE3	Q969Y0	559 aa		18.38	■□□□□ 0.53
MATR3-222	ENST00000513678	ACAP3	Q96P50	834 aa		18.38	■□□□□ 0.53
MATR3-222	ENST00000513678	TCHP	Q9BT92	498 aa		18.38	■□□□□ 0.53
MATR3-222	ENST00000513678	FBXO2	Q9UK22	296 aa	Predicted RBP	18.38	■□□□□ 0.53
MATR3-222	ENST00000513678	CLIC4	Q9Y696	253 aa		18.38	■□□□□ 0.53
MATR3-222	ENST00000513678	CIT	O14578	2027 aa		18.37	■□□□□ 0.53
MATR3-222	ENST00000513678	ANHX	E9PGG2	379 aa		18.37	■□□□□ 0.53
MATR3-222	ENST00000513678		I3L4J1	428 aa		18.37	■□□□□ 0.53
MATR3-222	ENST00000513678	PODXL	O00592	558 aa		18.37	■□□□□ 0.53
MATR3-222	ENST00000513678	GALR2	O43603	387 aa	Predicted RBP	18.37	■□□□□ 0.53
MATR3-222	ENST00000513678	TRAPPC3	O43617	180 aa		18.37	■□□□□ 0.53
MATR3-222	ENST00000513678	NARS	O43776	548 aa	Known RBP	18.37	■□□□□ 0.53
MATR3-222	ENST00000513678	PIGR	P01833	764 aa		18.37	■□□□□ 0.53
MATR3-222	ENST00000513678	OR1D2	P34982	312 aa		18.37	■□□□□ 0.53
MATR3-222	ENST00000513678	DDIT3	P35638	169 aa		18.37	■□□□□ 0.53
MATR3-222	ENST00000513678	CLCN5	P51795	746 aa		18.37	■□□□□ 0.53
MATR3-222	ENST00000513678	KARS	Q15046	597 aa	Known RBP	18.37	■□□□□ 0.53
MATR3-222	ENST00000513678	PPM1L	Q5SGD2	360 aa		18.37	■□□□□ 0.53
MATR3-222	ENST00000513678	ANKS3	Q6ZW76	656 aa		18.37	■□□□□ 0.53
MATR3-222	ENST00000513678	RTL10	Q7L3V2	364 aa		18.37	■□□□□ 0.53
MATR3-222	ENST00000513678	HAUS6	Q7Z4H7	955 aa		18.37	■□□□□ 0.53

Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms