RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-222ENST00000493919 PCDH10Q9P2E7 1040 aa12.42□□□□□ -0.42
BRCA1-222ENST00000493919 MYO1AQ9UBC5 1043 aa12.42□□□□□ -0.42
BRCA1-222ENST00000493919 HOOK1Q9UJC3 728 aaKnown RBP12.42□□□□□ -0.42
BRCA1-222ENST00000493919 SATB2Q9UPW6 733 aa12.42□□□□□ -0.42
BRCA1-222ENST00000493919 EFR3BQ9Y2G0 817 aa12.42□□□□□ -0.42
BRCA1-222ENST00000493919 TMEM238LA0A1B0GVL6 79 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 GSTTP1A0A1W2PQM5 241 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 H3BRB1 525 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 TEX28O15482 410 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 ACTN4O43707 911 aaKnown RBP12.41□□□□□ -0.42
BRCA1-222ENST00000493919 STX6O43752 255 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 ATP5DP30049 168 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 PSEN2P49810 448 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 DR1Q01658 176 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 STIM1Q13586 685 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 EGFLAMQ63HQ2 1017 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 B4GALNT4Q76KP1 1039 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 MAIP1Q8WWC4 291 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 TCF12Q99081 682 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 RIT2Q99578 217 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 C16orf70Q9BSU1 422 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 TUT1Q9H6E5 874 aaKnown RBP12.41□□□□□ -0.42
BRCA1-222ENST00000493919 POLG2Q9UHN1 485 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 PCDHB2Q9Y5E7 798 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 RANBP2P49792 3224 aaKnown RBP12.41□□□□□ -0.42
BRCA1-222ENST00000493919 GRIN2DO15399 1336 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 MROH7Q68CQ1 1323 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 CEP290O15078 2479 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 PSMD10O75832 226 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 NPTXRO95502 500 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 TRAPPC10P48553 1259 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 TLE2Q04725 743 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 SNX17Q15036 470 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 BCL2A1Q16548 175 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 ZNF746Q6NUN9 644 aaPredicted RBP12.41□□□□□ -0.42
BRCA1-222ENST00000493919 TRMT1LQ7Z2T5 733 aaKnown RBP12.41□□□□□ -0.42
BRCA1-222ENST00000493919 MIER3Q7Z3K6 550 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 SESTD1Q86VW0 696 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 CCDC155Q8N6L0 562 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 C7orf31Q8N865 590 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 RPGRIP1Q96KN7 1286 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 FAM20AQ96MK3 541 aa12.41□□□□□ -0.42
BRCA1-222ENST00000493919 TYW1Q9NV66 732 aaKnown RBP12.41□□□□□ -0.42
BRCA1-222ENST00000493919 EMSYQ7Z589 1322 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 WDR64B1ANS9 1081 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 FOXN3O00409 490 aaPredicted RBP12.4□□□□□ -0.42
BRCA1-222ENST00000493919 RNASEH2AO75792 299 aaKnown RBP12.4□□□□□ -0.42
BRCA1-222ENST00000493919 SUPT20HL2P0C7V6 817 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 ALDH3A1P30838 453 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 TXKP42681 527 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 TOB1P50616 345 aaPredicted RBP12.4□□□□□ -0.42
BRCA1-222ENST00000493919 GUCY2FP51841 1108 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 UBASH3AP57075 661 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 NLRP12P59046 1061 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 BLMHQ13867 455 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 DPYSQ14117 519 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 RILPL1Q5EBL4 403 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 CCDC60Q8IWA6 550 aaPredicted RBP12.4□□□□□ -0.42
BRCA1-222ENST00000493919 SLFN12Q8IYM2 578 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 TEX9Q8N6V9 391 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 PAF1Q8N7H5 531 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 FAM71BQ8TC56 605 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 BRSK1Q8TDC3 778 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 DYDC1Q8WWB3 177 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 RABGGTAQ92696 567 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 HAS1Q92839 578 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 TMEM60Q9H2L4 133 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 WDR35Q9P2L0 1181 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 MTUS1Q9ULD2 1270 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 ZMYND8Q9ULU4 1186 aaPredicted RBP12.4□□□□□ -0.42
BRCA1-222ENST00000493919 MTMR6Q9Y217 621 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 NOD1Q9Y239 953 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 PCDHB6Q9Y5E3 794 aa12.4□□□□□ -0.42
BRCA1-222ENST00000493919 GOLGA6L7A0A1B0GV03 622 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 DCDC2CA8MYV0 355 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 ANKRD65E5RJM6 399 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 MAP2K7O14733 419 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 TBX3O15119 743 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 PSAPP07602 524 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 SYN1P17600 705 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 HALP42357 657 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 JAK3P52333 1124 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 POLR2FP61218 127 aaKnown RBP12.39□□□□□ -0.43
BRCA1-222ENST00000493919 MKRN4PQ13434 485 aaPredicted RBP12.39□□□□□ -0.43
BRCA1-222ENST00000493919 ERCC6LQ2NKX8 1250 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 FAM160B1Q5W0V3 765 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 NCAPH2Q6IBW4 605 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 NOP9Q86U38 636 aaKnown RBP12.39□□□□□ -0.43
BRCA1-222ENST00000493919 TMEM151BQ8IW70 566 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 SGCDQ92629 289 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 TBC1D20Q96BZ9 403 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 ANKRD27Q96NW4 1050 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 PCYT2Q99447 389 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 NSRP1Q9H0G5 558 aaKnown RBP12.39□□□□□ -0.43
BRCA1-222ENST00000493919 SMARCAD1Q9H4L7 1026 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 TRMT13Q9NUP7 481 aaKnown RBP12.39□□□□□ -0.43
BRCA1-222ENST00000493919 ERAP1Q9NZ08 941 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 VPS18Q9P253 973 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 PRKAG2Q9UGJ0 569 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 VAV3Q9UKW4 847 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms