RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 FBXL18Q96ME1 805 aa18.66■□□□□ 0.58
LIME1-208ENST00000493265 ZBED2Q9BTP6 218 aa18.66■□□□□ 0.58
LIME1-208ENST00000493265 RNF216Q9NWF9 866 aaPredicted RBP18.66■□□□□ 0.58
LIME1-208ENST00000493265 MAGEC2Q9UBF1 373 aaPredicted RBP18.66■□□□□ 0.58
LIME1-208ENST00000493265 GIT1Q9Y2X7 761 aa18.66■□□□□ 0.58
LIME1-208ENST00000493265 TCF20Q9UGU0 1960 aaKnown RBP18.65■□□□□ 0.58
LIME1-208ENST00000493265 ARL5CA6NH57 179 aa18.65■□□□□ 0.58
LIME1-208ENST00000493265 TBKBP1A7MCY6 615 aa18.65■□□□□ 0.58
LIME1-208ENST00000493265 OFD1O75665 1012 aa18.65■□□□□ 0.58
LIME1-208ENST00000493265 CAVIN2O95810 425 aa18.65■□□□□ 0.58
LIME1-208ENST00000493265 POMCP01189 267 aa18.65■□□□□ 0.58
LIME1-208ENST00000493265 SCNN1GP51170 649 aa18.65■□□□□ 0.58
LIME1-208ENST00000493265 NCAPHQ15003 741 aa18.65■□□□□ 0.58
LIME1-208ENST00000493265 IQCB1Q15051 598 aa18.65■□□□□ 0.58
LIME1-208ENST00000493265 DCAF17Q5H9S7 520 aaPredicted RBP18.65■□□□□ 0.58
LIME1-208ENST00000493265 TCERG1LQ5VWI1 586 aa18.65■□□□□ 0.58
LIME1-208ENST00000493265 TOP1MTQ969P6 601 aa18.65■□□□□ 0.58
LIME1-208ENST00000493265 KIF12Q96FN5 646 aa18.65■□□□□ 0.58
LIME1-208ENST00000493265 FAM84AQ96KN4 292 aa18.65■□□□□ 0.58
LIME1-208ENST00000493265 POP1Q99575 1024 aaKnown RBP18.65■□□□□ 0.58
LIME1-208ENST00000493265 THAP9Q9H5L6 903 aa18.65■□□□□ 0.58
LIME1-208ENST00000493265 MMRN2Q9H8L6 949 aa18.65■□□□□ 0.58
LIME1-208ENST00000493265 UBN1Q9NPG3 1134 aa18.65■□□□□ 0.58
LIME1-208ENST00000493265 ARMCX3Q9UH62 379 aaPredicted RBP18.65■□□□□ 0.58
LIME1-208ENST00000493265 TTC26A0AVF1 554 aa18.64■□□□□ 0.57
LIME1-208ENST00000493265 GOLGA6L19H0YKK7 550 aa18.64■□□□□ 0.57
LIME1-208ENST00000493265 IKBKBO14920 756 aa18.64■□□□□ 0.57
LIME1-208ENST00000493265 IL18RAPO95256 599 aa18.64■□□□□ 0.57
LIME1-208ENST00000493265 TRIM49P0CI25 452 aa18.64■□□□□ 0.57
LIME1-208ENST00000493265 TRIM49CP0CI26 452 aa18.64■□□□□ 0.57
LIME1-208ENST00000493265 ATP2A2P16615 1042 aaKnown RBP18.64■□□□□ 0.57
LIME1-208ENST00000493265 MTIF2P46199 727 aaKnown RBP18.64■□□□□ 0.57
LIME1-208ENST00000493265 MRPS5P82675 430 aaKnown RBP18.64■□□□□ 0.57
LIME1-208ENST00000493265 JADE1Q6IE81 842 aa18.64■□□□□ 0.57
LIME1-208ENST00000493265 GAS2L3Q86XJ1 694 aa18.64■□□□□ 0.57
LIME1-208ENST00000493265 IRF2BP1Q8IU81 584 aa18.64■□□□□ 0.57
LIME1-208ENST00000493265 FAM114A1Q8IWE2 563 aa18.64■□□□□ 0.57
LIME1-208ENST00000493265 URGCPQ8TCY9 931 aa18.64■□□□□ 0.57
LIME1-208ENST00000493265 PLEKHO2Q8TD55 490 aa18.64■□□□□ 0.57
LIME1-208ENST00000493265 TMEM174Q8WUU8 243 aa18.64■□□□□ 0.57
LIME1-208ENST00000493265 MFSD14AQ96MC6 490 aa18.64■□□□□ 0.57
LIME1-208ENST00000493265 FNBP1Q96RU3 617 aa18.64■□□□□ 0.57
LIME1-208ENST00000493265 MKNK1Q9BUB5 465 aa18.64■□□□□ 0.57
LIME1-208ENST00000493265 MIOSQ9NXC5 875 aa18.64■□□□□ 0.57
LIME1-208ENST00000493265 REV3LO60673 3130 aa18.63■□□□□ 0.57
LIME1-208ENST00000493265 KCNJ18B7U540 433 aa18.63■□□□□ 0.57
LIME1-208ENST00000493265 HOXA2O43364 376 aa18.63■□□□□ 0.57
LIME1-208ENST00000493265 GNA14O95837 355 aa18.63■□□□□ 0.57
LIME1-208ENST00000493265 NFICP08651 508 aa18.63■□□□□ 0.57
LIME1-208ENST00000493265 TNNI1P19237 187 aa18.63■□□□□ 0.57
LIME1-208ENST00000493265 COL9A1P20849 921 aa18.63■□□□□ 0.57
LIME1-208ENST00000493265 CDK11BP21127 795 aaKnown RBP18.63■□□□□ 0.57
LIME1-208ENST00000493265 VAMP7P51809 220 aa18.63■□□□□ 0.57
LIME1-208ENST00000493265 TPM4P67936 248 aa18.63■□□□□ 0.57
LIME1-208ENST00000493265 DLG4P78352 724 aa18.63■□□□□ 0.57
LIME1-208ENST00000493265 TFAMQ00059 246 aaKnown RBP18.63■□□□□ 0.57
LIME1-208ENST00000493265 KCNJ12Q14500 433 aa18.63■□□□□ 0.57
LIME1-208ENST00000493265 PSMD6Q15008 389 aa18.63■□□□□ 0.57
LIME1-208ENST00000493265 NOMO2Q5JPE7 1267 aa18.63■□□□□ 0.57
LIME1-208ENST00000493265 INTS8Q75QN2 995 aaKnown RBP18.63■□□□□ 0.57
LIME1-208ENST00000493265 CRIPAKQ8N1N5 446 aa18.63■□□□□ 0.57
LIME1-208ENST00000493265 TMEM130Q8N3G9 435 aa18.63■□□□□ 0.57
LIME1-208ENST00000493265 ZMAT2Q96NC0 199 aaKnown RBP18.63■□□□□ 0.57
LIME1-208ENST00000493265 CASD1Q96PB1 797 aa18.63■□□□□ 0.57
LIME1-208ENST00000493265 SLC9A7Q96T83 725 aa18.63■□□□□ 0.57
LIME1-208ENST00000493265 YME1L1Q96TA2 773 aa18.63■□□□□ 0.57
LIME1-208ENST00000493265 PLEKHA5Q9HAU0 1116 aa18.63■□□□□ 0.57
LIME1-208ENST00000493265 PCDHA11Q9Y5I1 949 aa18.63■□□□□ 0.57
LIME1-208ENST00000493265 PTPRSQ13332 1948 aa18.62■□□□□ 0.57
LIME1-208ENST00000493265 TTC3P53804 2025 aa18.62■□□□□ 0.57
LIME1-208ENST00000493265 SMIM28A0A1B0GU29 152 aa18.62■□□□□ 0.57
LIME1-208ENST00000493265 LRRIQ3A6PVS8 624 aaPredicted RBP18.62■□□□□ 0.57
LIME1-208ENST00000493265 PTGESO14684 152 aa18.62■□□□□ 0.57
LIME1-208ENST00000493265 MAPK13O15264 365 aa18.62■□□□□ 0.57
LIME1-208ENST00000493265 DGKIO75912 1065 aa18.62■□□□□ 0.57
LIME1-208ENST00000493265 RNASELQ05823 741 aaKnown RBP18.62■□□□□ 0.57
LIME1-208ENST00000493265 BFSP1Q12934 665 aa18.62■□□□□ 0.57
LIME1-208ENST00000493265 TMEM132DQ14C87 1099 aa18.62■□□□□ 0.57
LIME1-208ENST00000493265 CDKAL1Q5VV42 579 aa18.62■□□□□ 0.57
LIME1-208ENST00000493265 ALKAL1Q6UXT8 129 aa18.62■□□□□ 0.57
LIME1-208ENST00000493265 FRMD5Q7Z6J6 570 aa18.62■□□□□ 0.57
LIME1-208ENST00000493265 HERC6Q8IVU3 1022 aa18.62■□□□□ 0.57
LIME1-208ENST00000493265 C18orf25Q96B23 403 aaPredicted RBP18.62■□□□□ 0.57
LIME1-208ENST00000493265 UHRF1Q96T88 793 aaPredicted RBP18.62■□□□□ 0.57
LIME1-208ENST00000493265 TMEM117Q9H0C3 514 aa18.62■□□□□ 0.57
LIME1-208ENST00000493265 RBSNQ9H1K0 784 aa18.62■□□□□ 0.57
LIME1-208ENST00000493265 METTL14Q9HCE5 456 aaKnown RBP18.62■□□□□ 0.57
LIME1-208ENST00000493265 CNTN3Q9P232 1028 aa18.62■□□□□ 0.57
LIME1-208ENST00000493265 PLAGL2Q9UPG8 496 aa18.62■□□□□ 0.57
LIME1-208ENST00000493265 CITO14578 2027 aa18.61■□□□□ 0.57
LIME1-208ENST00000493265 PTPRJQ12913 1337 aa18.61■□□□□ 0.57
LIME1-208ENST00000493265 PES1O00541 588 aaKnown RBP18.61■□□□□ 0.57
LIME1-208ENST00000493265 THP07101 528 aa18.61■□□□□ 0.57
LIME1-208ENST00000493265 ATP1A3P13637 1013 aa18.61■□□□□ 0.57
LIME1-208ENST00000493265 GUCY2FP51841 1108 aa18.61■□□□□ 0.57
LIME1-208ENST00000493265 SURF1Q15526 300 aa18.61■□□□□ 0.57
LIME1-208ENST00000493265 TCP11X2Q5H9J9 407 aa18.61■□□□□ 0.57
LIME1-208ENST00000493265 CD302Q8IX05 232 aa18.61■□□□□ 0.57
LIME1-208ENST00000493265 EFCAB13Q8IY85 973 aa18.61■□□□□ 0.57
LIME1-208ENST00000493265 GSTCDQ8NEC7 633 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms