RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 EXOC4Q96A65 974 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 EMID1Q96A84 441 aaPredicted RBP11.54□□□□□ -0.56
USP4-214ENST00000491791 TMEM143Q96AN5 459 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 ARHGEF26Q96DR7 871 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 MMP19Q99542 508 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 CGRRF1Q99675 332 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 FAM213AQ9BRX8 229 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 THAP2Q9H0W7 228 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 SMARCAD1Q9H4L7 1026 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 AZI2Q9H6S1 392 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 SUGCTQ9HAC7 445 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 PDE11AQ9HCR9 933 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 ZCCHC17Q9NP64 241 aaKnown RBP11.54□□□□□ -0.56
USP4-214ENST00000491791 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.54□□□□□ -0.56
USP4-214ENST00000491791 TAS2R14Q9NYV8 317 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 PNMA3Q9UL41 463 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 PCDHB2Q9Y5E7 798 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 ARIH2O95376 493 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 VNN1O95497 513 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 GNRH1P01148 92 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 GLI1P08151 1106 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 UNGP13051 313 aaPredicted RBP11.53□□□□□ -0.56
USP4-214ENST00000491791 TBXAS1P24557 533 aaPredicted RBP11.53□□□□□ -0.56
USP4-214ENST00000491791 PEX5P50542 639 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 PDE6CP51160 858 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 NLRP11P59045 1033 aaKnown RBP11.53□□□□□ -0.56
USP4-214ENST00000491791 ERVK-9P63128 1117 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 MCL1Q07820 350 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 PAK2Q13177 524 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 IRF5Q13568 498 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 CLEC16AQ2KHT3 1053 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 TSHZ1Q6ZSZ6 1077 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 BRSK2Q8IWQ3 736 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 WHAMMQ8TF30 809 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 PRPF31Q8WWY3 499 aaKnown RBP11.53□□□□□ -0.56
USP4-214ENST00000491791 TATDN2Q93075 761 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 TRIM11Q96F44 468 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 BICD1Q96G01 975 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 VCPIP1Q96JH7 1222 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 ZNF333Q96JL9 665 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 FNBP1Q96RU3 617 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 POP1Q99575 1024 aaKnown RBP11.53□□□□□ -0.56
USP4-214ENST00000491791 ARID3AQ99856 593 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 SH3GL2Q99962 352 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 MRPL4Q9BYD3 311 aaKnown RBP11.53□□□□□ -0.56
USP4-214ENST00000491791 WNT8AQ9H1J5 351 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 FZD8Q9H461 694 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 PTPRHQ9HD43 1115 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 OSGEPQ9NPF4 335 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 TOPORSQ9NS56 1045 aaPredicted RBP11.53□□□□□ -0.56
USP4-214ENST00000491791 EHD2Q9NZN4 543 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 MORF4L1Q9UBU8 362 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 NOC2LQ9Y3T9 749 aaKnown RBP11.53□□□□□ -0.56
USP4-214ENST00000491791 ALG6Q9Y672 507 aa11.53□□□□□ -0.56
USP4-214ENST00000491791 MKI67P46013 3256 aaKnown RBP11.53□□□□□ -0.56
USP4-214ENST00000491791 STRNO43815 780 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 CEP104O60308 925 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 HBP1O60381 514 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 HLA-DRAP01903 254 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 CYP1A1P04798 512 aaPredicted RBP11.52□□□□□ -0.57
USP4-214ENST00000491791 HOXD8P13378 290 aaPredicted RBP11.52□□□□□ -0.57
USP4-214ENST00000491791 EN2P19622 333 aaPredicted RBP11.52□□□□□ -0.57
USP4-214ENST00000491791 GCLCP48506 637 aaPredicted RBP11.52□□□□□ -0.57
USP4-214ENST00000491791 ZNF132P52740 706 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 DRG2P55039 364 aaKnown RBP11.52□□□□□ -0.57
USP4-214ENST00000491791 PRMT2P55345 433 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 CCNA1P78396 465 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 SP4Q02446 784 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 TTLL4Q14679 1199 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 PLCB4Q15147 1175 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 FAM187BQ17R55 369 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 ZNF792Q3KQV3 632 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 WDR44Q5JSH3 913 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 ZNF484Q5JVG2 852 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 HABP4Q5JVS0 413 aaKnown RBP11.52□□□□□ -0.57
USP4-214ENST00000491791 TDRD10Q5VZ19 366 aaKnown RBP11.52□□□□□ -0.57
USP4-214ENST00000491791 MAMDC4Q6UXC1 1216 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 MAATS1Q7Z4T9 603 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 SLC47A2Q86VL8 602 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 WDR49Q8IV35 697 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 CD302Q8IX05 232 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 LINC01465Q8N7H1 131 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 PSMB7Q99436 277 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 ACO2Q99798 780 aaKnown RBP11.52□□□□□ -0.57
USP4-214ENST00000491791 PAGR1Q9BTK6 254 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 MSTO1Q9BUK6 570 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 TARS2Q9BW92 718 aaKnown RBP11.52□□□□□ -0.57
USP4-214ENST00000491791 FAM124BQ9H5Z6 455 aaPredicted RBP11.52□□□□□ -0.57
USP4-214ENST00000491791 VTA1Q9NP79 307 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 C1orf112Q9NSG2 853 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 RBAKQ9NYW8 714 aaPredicted RBP11.52□□□□□ -0.57
USP4-214ENST00000491791 SMARCAL1Q9NZC9 954 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 PACSIN2Q9UNF0 486 aaPredicted RBP11.52□□□□□ -0.57
USP4-214ENST00000491791 COL1A2P08123 1366 aa11.52□□□□□ -0.57
USP4-214ENST00000491791 ZNFX1Q9P2E3 1918 aaKnown RBP11.51□□□□□ -0.57
USP4-214ENST00000491791 LRRIQ4A6NIV6 560 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 AGPSO00116 658 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 ACKR2O00590 384 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 OGTO15294 1046 aa11.51□□□□□ -0.57
USP4-214ENST00000491791 SART1O43290 800 aaKnown RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms