RNA–Protein interactions for RNA: ENST00000476045.5

VPS13D-206, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 380 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-206ENST00000476045 SREK1Q8WXA9 508 aaKnown RBP4.8□□□□□ -1.64
VPS13D-206ENST00000476045 VWCEQ96DN2 955 aa4.8□□□□□ -1.64
VPS13D-206ENST00000476045 MTMR8Q96EF0 704 aa4.8□□□□□ -1.64
VPS13D-206ENST00000476045 RMDN3Q96TC7 470 aa4.8□□□□□ -1.64
VPS13D-206ENST00000476045 LZTS2Q9BRK4 669 aa4.8□□□□□ -1.64
VPS13D-206ENST00000476045 SPZ1Q9BXG8 430 aa4.8□□□□□ -1.64
VPS13D-206ENST00000476045 LSG1Q9H089 658 aaKnown RBP4.8□□□□□ -1.64
VPS13D-206ENST00000476045 WNT8AQ9H1J5 351 aa4.8□□□□□ -1.64
VPS13D-206ENST00000476045 DUSP15Q9H1R2 295 aaPredicted RBP4.8□□□□□ -1.64
VPS13D-206ENST00000476045 TTYH1Q9H313 450 aaPredicted RBP4.8□□□□□ -1.64
VPS13D-206ENST00000476045 TSPY26PQ9H489 355 aa4.8□□□□□ -1.64
VPS13D-206ENST00000476045 CARS2Q9HA77 564 aaKnown RBP4.8□□□□□ -1.64
VPS13D-206ENST00000476045 SLC28A3Q9HAS3 691 aa4.8□□□□□ -1.64
VPS13D-206ENST00000476045 PRDM7Q9NQW5 492 aa4.8□□□□□ -1.64
VPS13D-206ENST00000476045 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.8□□□□□ -1.64
VPS13D-206ENST00000476045 THEGQ9P2T0 379 aa4.8□□□□□ -1.64
VPS13D-206ENST00000476045 REV1Q9UBZ9 1251 aa4.8□□□□□ -1.64
VPS13D-206ENST00000476045 SLC4A7Q9Y6M7 1214 aa4.8□□□□□ -1.64
VPS13D-206ENST00000476045 LOXHD1Q8IVV2 1947 aa4.8□□□□□ -1.64
VPS13D-206ENST00000476045 TTC3P53804 2025 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 ZNF503-AS2A6NEH8 195 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 hCG_1984214I3L0E3 225 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 SGSM2O43147 1006 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 LARGE1O95461 756 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 MYL3P08590 195 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 CALM1P0DP23 149 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 CALM2P0DP24 149 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 CALM3P0DP25 149 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 ATP2A2P16615 1042 aaKnown RBP4.79□□□□□ -1.64
VPS13D-206ENST00000476045 PLCG1P19174 1290 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 MSNP26038 577 aaKnown RBP4.79□□□□□ -1.64
VPS13D-206ENST00000476045 SMARCA1P28370 1054 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 CCND2P30279 289 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 CYP2C18P33260 490 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 KCNJ6P48051 423 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 GNAQP50148 359 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 YARSP54577 528 aaKnown RBP4.79□□□□□ -1.64
VPS13D-206ENST00000476045 EPHB4P54760 987 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 PTH1RQ03431 593 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 ARHGAP1Q07960 439 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 MESP2Q0VG99 397 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 WTAPQ15007 396 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 SEC23AQ15436 765 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 AAK1Q2M2I8 961 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 FAM47CQ5HY64 1035 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 ARHGEF16Q5VV41 709 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 CCDC62Q6P9F0 684 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 ZNF365Q70YC5 407 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 RUFY3Q7L099 469 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 EEPD1Q7L9B9 569 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 CATIPQ7Z7H3 387 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 CDH24Q86UP0 819 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 RELL1Q8IUW5 271 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 CCDC83Q8IWF9 413 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 ADGRF4Q8IZF3 695 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 ZNF713Q8N859 430 aaPredicted RBP4.79□□□□□ -1.64
VPS13D-206ENST00000476045 FAM13CQ8NE31 585 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 CTCFLQ8NI51 663 aaPredicted RBP4.79□□□□□ -1.64
VPS13D-206ENST00000476045 MYLIPQ8WY64 445 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 CCDC120Q96HB5 630 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 INTS4Q96HW7 963 aaKnown RBP4.79□□□□□ -1.64
VPS13D-206ENST00000476045 CDHR1Q96JP9 859 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 JAKMIP1Q96N16 626 aaKnown RBP4.79□□□□□ -1.64
VPS13D-206ENST00000476045 ALPK1Q96QP1 1244 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 PDCD2LQ9BRP1 358 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 ASPNQ9BXN1 380 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 EHMT1Q9H9B1 1298 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 PXMP2Q9NR77 195 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 PDGFCQ9NRA1 345 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 PDRG1Q9NUG6 133 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 KBTBD4Q9NVX7 518 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 SEC63Q9UGP8 760 aaKnown RBP4.79□□□□□ -1.64
VPS13D-206ENST00000476045 ZNF215Q9UL58 517 aaPredicted RBP4.79□□□□□ -1.64
VPS13D-206ENST00000476045 SMC3Q9UQE7 1217 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 PCDHA1Q9Y5I3 950 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 MRVI1Q9Y6F6 885 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 ATG2AQ2TAZ0 1938 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 KIAA1671Q9BY89 1806 aa4.79□□□□□ -1.64
VPS13D-206ENST00000476045 GRIN2DO15399 1336 aa4.78□□□□□ -1.64
VPS13D-206ENST00000476045 KRTAP4-8A0A0G2JLE6 195 aa4.78□□□□□ -1.64
VPS13D-206ENST00000476045 KIF28PB7ZC32 967 aa4.78□□□□□ -1.64
VPS13D-206ENST00000476045 KLRF2D3W0D1 207 aa4.78□□□□□ -1.64
VPS13D-206ENST00000476045 GCOM1H8Y6P7 765 aaPredicted RBP4.78□□□□□ -1.64
VPS13D-206ENST00000476045 IFIT3O14879 490 aaKnown RBP4.78□□□□□ -1.64
VPS13D-206ENST00000476045 ARIH2O95376 493 aa4.78□□□□□ -1.64
VPS13D-206ENST00000476045 CFBP00751 764 aa4.78□□□□□ -1.64
VPS13D-206ENST00000476045 CXCL10P02778 98 aa4.78□□□□□ -1.64
VPS13D-206ENST00000476045 PTMAP06454 111 aaKnown RBP4.78□□□□□ -1.64
VPS13D-206ENST00000476045 CYP21A2P08686 494 aa4.78□□□□□ -1.64
VPS13D-206ENST00000476045 POLR2MP0CAP2 368 aa4.78□□□□□ -1.64
VPS13D-206ENST00000476045 GOLGA8HP0CJ92 632 aa4.78□□□□□ -1.64
VPS13D-206ENST00000476045 ZSCAN22P10073 491 aaPredicted RBP4.78□□□□□ -1.64
VPS13D-206ENST00000476045 GNAT1P11488 350 aa4.78□□□□□ -1.64
VPS13D-206ENST00000476045 UBA1P22314 1058 aaKnown RBP4.78□□□□□ -1.64
VPS13D-206ENST00000476045 GBP2P32456 591 aaPredicted RBP4.78□□□□□ -1.64
VPS13D-206ENST00000476045 AFMP43652 599 aa4.78□□□□□ -1.64
VPS13D-206ENST00000476045 RCAN1P53805 252 aa4.78□□□□□ -1.64
VPS13D-206ENST00000476045 SNAP25P60880 206 aa4.78□□□□□ -1.64
VPS13D-206ENST00000476045 PSMC6P62333 389 aa4.78□□□□□ -1.64
VPS13D-206ENST00000476045 NEDD9Q14511 834 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms