RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 CLSTN3Q9BQT9 956 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 OXCT2Q9BYC2 517 aaPredicted RBP7.76□□□□□ -1.17
VPS41-208ENST00000448833 SEMA4AQ9H3S1 761 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 LARSQ9P2J5 1176 aaKnown RBP7.76□□□□□ -1.17
VPS41-208ENST00000448833 CDH22Q9UJ99 828 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 FBXW11Q9UKB1 542 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 KCNH3Q9ULD8 1083 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 MAFFQ9ULX9 164 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 GDAQ9Y2T3 454 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.76□□□□□ -1.17
VPS41-208ENST00000448833 BACE2Q9Y5Z0 518 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 USP34Q70CQ2 3546 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 MIA3Q5JRA6 1907 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 MYH15Q9Y2K3 1946 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 DOCK6Q96HP0 2047 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 SMIM28A0A1B0GU29 152 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 CLDN3O15551 220 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 XPOTO43592 962 aaKnown RBP7.75□□□□□ -1.17
VPS41-208ENST00000448833 GFRA3O60609 400 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 TOM1L1O75674 476 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 RFPL2O75678 378 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 KIF4AO95239 1232 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 C8AP07357 584 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 KCNE1P15382 129 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 PAX3P23760 479 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 GUCY2CP25092 1073 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 OR1D2P34982 312 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 TOB1P50616 345 aaPredicted RBP7.75□□□□□ -1.17
VPS41-208ENST00000448833 PFKPQ01813 784 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 ST3GAL1Q11201 340 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 NAB2Q15742 525 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 UPP1Q16831 310 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 ZNF568Q3ZCX4 644 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 XKR4Q5GH76 650 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 RTP2Q5QGT7 225 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 AXDND1Q5T1B0 1012 aaPredicted RBP7.75□□□□□ -1.17
VPS41-208ENST00000448833 NT5DC1Q5TFE4 455 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 PHLDB3Q6NSJ2 640 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 RINT1Q6NUQ1 792 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 PRSS55Q6UWB4 352 aaPredicted RBP7.75□□□□□ -1.17
VPS41-208ENST00000448833 MPZL3Q6UWV2 235 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 ALKAL1Q6UXT8 129 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 ZPBP2Q6X784 338 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 C1orf186Q6ZWK4 172 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 GLYCTKQ8IVS8 523 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 SIX5Q8N196 739 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 TMEM105Q8N8V8 129 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 ZNF461Q8TAF7 563 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 SPIRE2Q8WWL2 714 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 BSNDQ8WZ55 320 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 ZNF707Q96C28 371 aaPredicted RBP7.75□□□□□ -1.17
VPS41-208ENST00000448833 PPP1R10Q96QC0 940 aaKnown RBP7.75□□□□□ -1.17
VPS41-208ENST00000448833 PAAF1Q9BRP4 392 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 PLEKHA5Q9HAU0 1116 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 SLC2A4RGQ9NR83 387 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.75□□□□□ -1.17
VPS41-208ENST00000448833 ARHGAP28Q9P2N2 729 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 CDH7Q9ULB5 785 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 NUB1Q9Y5A7 615 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 PCDHB6Q9Y5E3 794 aa7.75□□□□□ -1.17
VPS41-208ENST00000448833 VPS13AQ96RL7 3174 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 ARHGEF37A1IGU5 675 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 TTLL13PA6NNM8 815 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 ANHXE9PGG2 379 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 E9PMD0 336 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 F8W810 466 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 H0Y858 1186 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 ZNF197O14709 1029 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 SYN3O14994 580 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 HIP1RO75146 1068 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 PDGFBP01127 241 aaPredicted RBP7.74□□□□□ -1.17
VPS41-208ENST00000448833 PLS3P13797 630 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 PTPN2P17706 415 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 RPL17P18621 184 aaKnown RBP7.74□□□□□ -1.17
VPS41-208ENST00000448833 MARCKSP29966 332 aaPredicted RBP7.74□□□□□ -1.17
VPS41-208ENST00000448833 UBA7P41226 1012 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 NBL1P41271 181 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 CLCNKBP51801 687 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 ATP2C1P98194 919 aaPredicted RBP7.74□□□□□ -1.17
VPS41-208ENST00000448833 HYIQ5T013 277 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 EEF1DP3Q658K8 133 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 TPGS2Q68CL5 300 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 RSPO2Q6UXX9 243 aaPredicted RBP7.74□□□□□ -1.17
VPS41-208ENST00000448833 GET4Q7L5D6 327 aaPredicted RBP7.74□□□□□ -1.17
VPS41-208ENST00000448833 GRASPQ7Z6J2 395 aaPredicted RBP7.74□□□□□ -1.17
VPS41-208ENST00000448833 ELMOD1Q8N336 334 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 EFCAB3Q8N7B9 438 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 SYT2Q8N9I0 419 aaPredicted RBP7.74□□□□□ -1.17
VPS41-208ENST00000448833 APPL2Q8NEU8 664 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 HASPINQ8TF76 798 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 RABGGTAQ92696 567 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 CALML4Q96GE6 196 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 B3GALT6Q96L58 329 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 NELL2Q99435 816 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 KIF2CQ99661 725 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 PTPRHQ9HD43 1115 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 GDE1Q9NZC3 331 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 MTRRQ9UBK8 725 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 ODF2LQ9ULJ1 636 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 POLIQ9UNA4 740 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms