RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 KLRF2D3W0D1 207 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 ACSL3O95573 720 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 BCL10O95999 233 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 NQO1P15559 274 aaKnown RBP7.54□□□□□ -1.2
VPS53-204ENST00000437048 CYP2J2P51589 502 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 DDR1Q08345 913 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 NAA35Q5VZE5 725 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 MZT2BQ6NZ67 158 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 TMC5Q6UXY8 1006 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 FAM92BQ6ZTR7 304 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 CHCHD6Q9BRQ6 235 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 FKBP14Q9NWM8 211 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 ZNF219Q9P2Y4 722 aaPredicted RBP7.54□□□□□ -1.2
VPS53-204ENST00000437048 WBP11Q9Y2W2 641 aaKnown RBP7.54□□□□□ -1.2
VPS53-204ENST00000437048 OPLAHO14841 1288 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 TSHRP16473 764 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 CDK7P50613 346 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 NAA30Q147X3 362 aaPredicted RBP7.54□□□□□ -1.2
VPS53-204ENST00000437048 RFX4Q33E94 735 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 LEMD2Q8NC56 503 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 FAM81AQ8TBF8 368 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 NEDD4LQ96PU5 975 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 ZBED2Q9BTP6 218 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 PTPN22Q9Y2R2 807 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 MAP1BP46821 2468 aaKnown RBP7.54□□□□□ -1.2
VPS53-204ENST00000437048 PDZK1P1A8MUH7 402 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 ANXA6P08133 673 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 TTBK2Q6IQ55 1244 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 TCF3P15923 654 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 CCR3P51677 355 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 GYS2P54840 703 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 CYP4A11Q02928 519 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 CYP4A22Q5TCH4 519 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 AMER2Q8N7J2 671 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 FNIP1Q8TF40 1166 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 ULK4Q96C45 1275 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 STK33Q9BYT3 514 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 CCNB1IP1Q9NPC3 277 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 DLGAP2Q9P1A6 1054 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 CDC42BPGQ6DT37 1551 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 PTPN4P29074 926 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 YWHAHQ04917 246 aaPredicted RBP7.54□□□□□ -1.2
VPS53-204ENST00000437048 TTC39BQ5VTQ0 682 aaPredicted RBP7.54□□□□□ -1.2
VPS53-204ENST00000437048 LRRC8DQ7L1W4 858 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 C2orf40Q9H1Z8 148 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 ADAM22Q9P0K1 906 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 NFIBO00712 420 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 TRIM13O60858 407 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 AKAP5P24588 427 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 HNRNPH1P31943 449 aaKnown RBP7.54□□□□□ -1.2
VPS53-204ENST00000437048 MARCH10Q8NA82 808 aaPredicted RBP7.54□□□□□ -1.2
VPS53-204ENST00000437048 IMPAD1Q9NX62 359 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 AMACRQ9UHK6 382 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 ARIH1Q9Y4X5 557 aaPredicted RBP7.54□□□□□ -1.2
VPS53-204ENST00000437048 IRGMA1A4Y4 181 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 NR1H2P55055 460 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 SESN2P58004 480 aaPredicted RBP7.54□□□□□ -1.2
VPS53-204ENST00000437048 DAB2P98082 770 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 ARHGEF6Q15052 776 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 ANO4Q32M45 955 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 FAM160B2Q86V87 743 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 NOA1Q8NC60 698 aaKnown RBP7.54□□□□□ -1.2
VPS53-204ENST00000437048 CCSER1Q9C0I3 900 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 LRRC4Q9HBW1 653 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 VPS54Q9P1Q0 977 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 PAK5Q9P286 719 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 CDYLQ9Y232 598 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 ZNF532Q9HCE3 1301 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 BTBD18B2RXH4 712 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 SNAP91O60641 907 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 ZNF12P17014 697 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 XPAP23025 273 aaPredicted RBP7.54□□□□□ -1.2
VPS53-204ENST00000437048 WARSP23381 471 aaKnown RBP7.54□□□□□ -1.2
VPS53-204ENST00000437048 ARHGEF26Q96DR7 871 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 GANQ9H2C0 597 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 SLC24A3Q9HC58 644 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 SLC40A1Q9NP59 571 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 SOWAHDA6NJG2 315 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 CFAP99D6REC4 459 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 MATN2O00339 956 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 BBS9Q3SYG4 887 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 HEATR6Q6AI08 1181 aaKnown RBP7.54□□□□□ -1.2
VPS53-204ENST00000437048 ANKS3Q6ZW76 656 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 TTC30AQ86WT1 665 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 FMR1NBQ8N0W7 255 aaPredicted RBP7.54□□□□□ -1.2
VPS53-204ENST00000437048 TTC30BQ8N4P2 665 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 KLHL23Q8NBE8 558 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 C19orf18Q8NEA5 215 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 ERP44Q9BS26 406 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 FSD1LQ9BXM9 530 aa7.54□□□□□ -1.2
VPS53-204ENST00000437048 CRNNQ9UBG3 495 aaPredicted RBP7.54□□□□□ -1.2
VPS53-204ENST00000437048 RNMTO43148 476 aaKnown RBP7.53□□□□□ -1.2
VPS53-204ENST00000437048 DYNC1LI2O43237 492 aaPredicted RBP7.53□□□□□ -1.2
VPS53-204ENST00000437048 RARGP13631 454 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 HLA-DPA1P20036 260 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 FAM83BQ5T0W9 1011 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 MYCBPAPQ8TBZ2 947 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 STON1Q9Y6Q2 735 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 TCP11X1B4DZS4 312 aa7.53□□□□□ -1.2
VPS53-204ENST00000437048 HOXC6P09630 235 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms