RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 TEKQ02763 1124 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 SEPT2Q15019 361 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 DLGAP5Q15398 846 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 CDC37Q16543 378 aaPredicted RBP5.79□□□□□ -1.48
VPS13A-207ENST00000419472 UVSSAQ2YD98 709 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 TRAPPC3LQ5T215 181 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 C2CD5Q86YS7 1000 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 Q8N1Y9 231 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 CHCHD4Q8N4Q1 142 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 NKAIN3Q8N8D7 197 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 LRRC46Q96FV0 321 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 HEXIM2Q96MH2 286 aaKnown RBP5.79□□□□□ -1.48
VPS13A-207ENST00000419472 KCNC2Q96PR1 638 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 P2RX7Q99572 595 aaKnown RBP5.79□□□□□ -1.48
VPS13A-207ENST00000419472 BRIP1Q9BX63 1249 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 AGXT2Q9BYV1 514 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 MLXIPQ9HAP2 919 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 TTLL3Q9Y4R7 772 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 DIP2AQ14689 1571 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 PODXLO00592 558 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 USO1O60763 962 aaKnown RBP5.79□□□□□ -1.48
VPS13A-207ENST00000419472 GYS1P13807 737 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 SYN1P17600 705 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 SDHAP31040 664 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 MAN2A2P49641 1150 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 UTP14CQ5TAP6 766 aaKnown RBP5.79□□□□□ -1.48
VPS13A-207ENST00000419472 SEZ6L2Q6UXD5 910 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 CRIPAKQ8N1N5 446 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 LINC00116Q8NCU8 138 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 PTPN18Q99952 460 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 LMAN2LQ9H0V9 348 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 RETREG1Q9H6L5 497 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 ERVK13-1Q9NX77 482 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 SYNPO2Q9UMS6 1093 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 PCDHA1Q9Y5I3 950 aa5.79□□□□□ -1.48
VPS13A-207ENST00000419472 ST20-MTHFSA0A0A6YYL1 179 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 NPHS1O60500 1241 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 PRLP01236 227 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 RPL17P18621 184 aaKnown RBP5.78□□□□□ -1.48
VPS13A-207ENST00000419472 ATXN1P54253 815 aaKnown RBP5.78□□□□□ -1.48
VPS13A-207ENST00000419472 MBTPS1Q14703 1052 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 NOMO1Q15155 1222 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 RNFT1Q5M7Z0 435 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 BTBD8Q5XKL5 378 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 DSTYKQ6XUX3 929 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 GAREM2Q75VX8 874 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 FMR1NBQ8N0W7 255 aaPredicted RBP5.78□□□□□ -1.48
VPS13A-207ENST00000419472 ZNF713Q8N859 430 aaPredicted RBP5.78□□□□□ -1.48
VPS13A-207ENST00000419472 OR14C36Q8NHC7 312 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 PLEKHO2Q8TD55 490 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 MAML1Q92585 1016 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 RUBCNQ92622 972 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 ZNF830Q96NB3 372 aaPredicted RBP5.78□□□□□ -1.48
VPS13A-207ENST00000419472 SEMA6BQ9H3T3 888 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 NFKBIL1Q9UBC1 381 aaPredicted RBP5.78□□□□□ -1.48
VPS13A-207ENST00000419472 ISY1Q9ULR0 285 aaKnown RBP5.78□□□□□ -1.48
VPS13A-207ENST00000419472 TMEM131LA2VDJ0 1609 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 FOXN3O00409 490 aaPredicted RBP5.78□□□□□ -1.48
VPS13A-207ENST00000419472 PIP5K1BO14986 540 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 NPHP4O75161 1426 aaPredicted RBP5.78□□□□□ -1.48
VPS13A-207ENST00000419472 SNRPBP14678 240 aaKnown RBP5.78□□□□□ -1.48
VPS13A-207ENST00000419472 RPS6KB1P23443 525 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 ACTN2P35609 894 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 CCR5P51681 352 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 PRKAA2P54646 552 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 SLC6A3Q01959 620 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 CCDC92Q53HC0 331 aaPredicted RBP5.78□□□□□ -1.48
VPS13A-207ENST00000419472 MFSD4BQ5TF39 518 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 GALNT6Q8NCL4 622 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 ZUFSPQ96AP4 578 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 KATNAL1Q9BW62 490 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 CAPN6Q9Y6Q1 641 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 SCAF11Q99590 1463 aaKnown RBP5.78□□□□□ -1.48
VPS13A-207ENST00000419472 TRPM2O94759 1503 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 BICDL2A1A5D9 508 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 MYL4P12829 197 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 DRG2P55039 364 aaKnown RBP5.78□□□□□ -1.48
VPS13A-207ENST00000419472 PCBP3P57721 371 aaKnown RBP5.78□□□□□ -1.48
VPS13A-207ENST00000419472 PLCL1Q15111 1095 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 KHDC1Q4VXA5 237 aaKnown RBP5.78□□□□□ -1.48
VPS13A-207ENST00000419472 FAM214BQ7L5A3 538 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 PPP1R3BQ86XI6 285 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 HERC6Q8IVU3 1022 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 NRSN1Q8IZ57 195 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 NLGN4XQ8N0W4 816 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 TCP11L2Q8N4U5 519 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 CLEC4DQ8WXI8 215 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 MSLNLQ96KJ4 702 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 SAMD11Q96NU1 681 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 NKIRAS2Q9NYR9 191 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 SLC13A4Q9UKG4 626 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 X6R8D5 127 aa5.78□□□□□ -1.48
VPS13A-207ENST00000419472 A0A0A0MRY4 1105 aa5.77□□□□□ -1.49
VPS13A-207ENST00000419472 HMX3A6NHT5 357 aa5.77□□□□□ -1.49
VPS13A-207ENST00000419472 SHISA8B8ZZ34 492 aa5.77□□□□□ -1.49
VPS13A-207ENST00000419472 ACOT7O00154 380 aa5.77□□□□□ -1.49
VPS13A-207ENST00000419472 ASNA1O43681 348 aa5.77□□□□□ -1.49
VPS13A-207ENST00000419472 MC4RP32245 332 aa5.77□□□□□ -1.49
VPS13A-207ENST00000419472 NRG1Q02297 640 aaPredicted RBP5.77□□□□□ -1.49
VPS13A-207ENST00000419472 CUL4BQ13620 913 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms