RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 EIF3HO15372 352 aaKnown RBP eCLIP15.9■□□□□ 0.14
NPHP4-201ENST00000378156 MDH1P40925 334 aaKnown RBP15.9■□□□□ 0.14
NPHP4-201ENST00000378156 CAV1Q03135 178 aa15.9■□□□□ 0.14
NPHP4-201ENST00000378156 WDR93Q6P2C0 686 aa15.9■□□□□ 0.14
NPHP4-201ENST00000378156 SYT2Q8N9I0 419 aaPredicted RBP15.9■□□□□ 0.14
NPHP4-201ENST00000378156 ABTB1Q969K4 478 aaPredicted RBP15.9■□□□□ 0.14
NPHP4-201ENST00000378156 NRBF2Q96F24 287 aa15.9■□□□□ 0.14
NPHP4-201ENST00000378156 CELF4Q9BZC1 486 aaKnown RBP15.9■□□□□ 0.14
NPHP4-201ENST00000378156 PIN4Q9Y237 131 aaKnown RBP15.9■□□□□ 0.14
NPHP4-201ENST00000378156 BRAFP15056 766 aa15.9■□□□□ 0.14
NPHP4-201ENST00000378156 VEGFAP15692 232 aaPredicted RBP15.9■□□□□ 0.14
NPHP4-201ENST00000378156 IRAK1P51617 712 aa15.9■□□□□ 0.14
NPHP4-201ENST00000378156 PAPD7Q5XG87 772 aaKnown RBP15.9■□□□□ 0.14
NPHP4-201ENST00000378156 RAB44Q7Z6P3 723 aaPredicted RBP15.9■□□□□ 0.14
NPHP4-201ENST00000378156 GTF3C2Q8WUA4 911 aaPredicted RBP15.9■□□□□ 0.14
NPHP4-201ENST00000378156 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.9■□□□□ 0.149e-7■■■■■ 58.1
NPHP4-201ENST00000378156 ANKRD26Q9UPS8 1709 aa15.89■□□□□ 0.14
NPHP4-201ENST00000378156 H3BQF6 201 aa15.89■□□□□ 0.14
NPHP4-201ENST00000378156 KRT37O76014 449 aa15.89■□□□□ 0.14
NPHP4-201ENST00000378156 KPNA2P52292 529 aaKnown RBP15.89■□□□□ 0.14
NPHP4-201ENST00000378156 DYNC1I2Q13409 638 aaKnown RBP15.89■□□□□ 0.14
NPHP4-201ENST00000378156 FIGNQ5HY92 759 aa15.89■□□□□ 0.14
NPHP4-201ENST00000378156 SYN2Q92777 582 aaPredicted RBP15.89■□□□□ 0.14
NPHP4-201ENST00000378156 STOML1Q9UBI4 398 aa15.89■□□□□ 0.14
NPHP4-201ENST00000378156 DMGDHQ9UI17 866 aaKnown RBP15.89■□□□□ 0.14
NPHP4-201ENST00000378156 AGAP1Q9UPQ3 857 aa15.89■□□□□ 0.14
NPHP4-201ENST00000378156 ARHGAP23Q9P227 1491 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 ADORA2BP29275 332 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 BCAR1P56945 870 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 NCOA4Q13772 614 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 URGCPQ8TCY9 931 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 CHMP6Q96FZ7 201 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 TRIM56Q9BRZ2 755 aaKnown RBP15.89■□□□□ 0.13
NPHP4-201ENST00000378156 INTS13Q9NVM9 706 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 PSD3Q9NYI0 1048 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 CHORDC1Q9UHD1 332 aaPredicted RBP15.89■□□□□ 0.13
NPHP4-201ENST00000378156 ASAP2O43150 1006 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 CREB3O43889 395 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 CXCL9Q07325 125 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 MOXD1Q6UVY6 613 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 KIAA0895Q8NCT3 520 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 GPRC5AQ8NFJ5 357 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 RDM1Q8NG50 284 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 GMCL1Q96IK5 515 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 ZBED2Q9BTP6 218 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 KIF9Q9HAQ2 790 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 TMX2Q9Y320 296 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 FAM237AA0A1B0GTK4 181 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 HSPA8P11142 646 aaKnown RBP15.89■□□□□ 0.13
NPHP4-201ENST00000378156 KRT10P13645 584 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 INPP1P49441 399 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 GPRASP2Q96D09 838 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 TNIP3Q96KP6 325 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 ZMAT2Q96NC0 199 aaKnown RBP15.89■□□□□ 0.13
NPHP4-201ENST00000378156 PACSIN1Q9BY11 444 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 YY1AP1Q9H869 796 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 CYP26B1Q9NR63 512 aa15.89■□□□□ 0.13
NPHP4-201ENST00000378156 CCL15-CCL14A0A0B4J2E2 113 aa15.88■□□□□ 0.13
NPHP4-201ENST00000378156 POLRMTO00411 1230 aaKnown RBP15.88■□□□□ 0.13
NPHP4-201ENST00000378156 C6orf222P0C671 652 aaPredicted RBP15.88■□□□□ 0.13
NPHP4-201ENST00000378156 TAP1Q03518 808 aa15.88■□□□□ 0.13
NPHP4-201ENST00000378156 CCL15Q16663 113 aa15.88■□□□□ 0.13
NPHP4-201ENST00000378156 DEPDC1BQ8WUY9 529 aa15.88■□□□□ 0.13
NPHP4-201ENST00000378156 CCDC138Q96M89 665 aa15.88■□□□□ 0.13
NPHP4-201ENST00000378156 RUSC1Q9BVN2 902 aa15.88■□□□□ 0.13
NPHP4-201ENST00000378156 MID2Q9UJV3 735 aa15.88■□□□□ 0.13
NPHP4-201ENST00000378156 NAGPAQ9UK23 515 aa15.88■□□□□ 0.13
NPHP4-201ENST00000378156 S100BP04271 92 aaPredicted RBP15.88■□□□□ 0.13
NPHP4-201ENST00000378156 ZNF157P51786 506 aaPredicted RBP15.88■□□□□ 0.13
NPHP4-201ENST00000378156 KRT17Q04695 432 aa15.88■□□□□ 0.13
NPHP4-201ENST00000378156 LRRC31Q6UY01 552 aa15.88■□□□□ 0.13
NPHP4-201ENST00000378156 ATP6V1E2Q96A05 226 aa15.88■□□□□ 0.13
NPHP4-201ENST00000378156 GCNAQ96QF7 691 aa15.88■□□□□ 0.13
NPHP4-201ENST00000378156 CCT8L2Q96SF2 557 aa15.88■□□□□ 0.13
NPHP4-201ENST00000378156 RBP5P82980 135 aa15.88■□□□□ 0.13
NPHP4-201ENST00000378156 DACT3Q96B18 629 aaPredicted RBP15.88■□□□□ 0.13
NPHP4-201ENST00000378156 SPARCL1Q14515 664 aa15.88■□□□□ 0.13
NPHP4-201ENST00000378156 DDX56Q9NY93 547 aaKnown RBP15.88■□□□□ 0.13
NPHP4-201ENST00000378156 ANGPTL3Q9Y5C1 460 aa15.88■□□□□ 0.13
NPHP4-201ENST00000378156 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.88■□□□□ 0.13
NPHP4-201ENST00000378156 IGSF9BQ9UPX0 1349 aa15.87■□□□□ 0.13
NPHP4-201ENST00000378156 TGFB2P61812 414 aa15.87■□□□□ 0.13
NPHP4-201ENST00000378156 SGSM1Q2NKQ1 1148 aa15.87■□□□□ 0.13
NPHP4-201ENST00000378156 EPM2AIP1Q7L775 607 aaPredicted RBP15.87■□□□□ 0.13
NPHP4-201ENST00000378156 SH3RF1Q7Z6J0 888 aa15.87■□□□□ 0.13
NPHP4-201ENST00000378156 MYLK4Q86YV6 388 aaPredicted RBP15.87■□□□□ 0.13
NPHP4-201ENST00000378156 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.87■□□□□ 0.131e-11■■■■■ 94.4
NPHP4-201ENST00000378156 C18orf8Q96DM3 657 aa15.87■□□□□ 0.13
NPHP4-201ENST00000378156 EPN3Q9H201 632 aa15.87■□□□□ 0.13
NPHP4-201ENST00000378156 RIOX1Q9H6W3 641 aa15.87■□□□□ 0.13
NPHP4-201ENST00000378156 IFT172Q9UG01 1749 aa15.87■□□□□ 0.13
NPHP4-201ENST00000378156 RIC1Q4ADV7 1423 aa15.87■□□□□ 0.13
NPHP4-201ENST00000378156 ATMINO43313 823 aaPredicted RBP15.87■□□□□ 0.13
NPHP4-201ENST00000378156 CETPP11597 493 aa15.87■□□□□ 0.13
NPHP4-201ENST00000378156 CASP4P49662 377 aa15.87■□□□□ 0.13
NPHP4-201ENST00000378156 SNRPFP62306 86 aaKnown RBP15.87■□□□□ 0.13
NPHP4-201ENST00000378156 TMED1Q13445 227 aa15.87■□□□□ 0.13
NPHP4-201ENST00000378156 ATG16L1Q676U5 607 aa15.87■□□□□ 0.13
NPHP4-201ENST00000378156 SPOPLQ6IQ16 392 aa15.87■□□□□ 0.13
NPHP4-201ENST00000378156 CCDC124Q96CT7 223 aaKnown RBP15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 115.4 ms