RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 FGD2Q7Z6J4 655 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 FRMD5Q7Z6J6 570 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 XXYLT1Q8NBI6 393 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 CLDN3O15551 220 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 MYL2P10916 166 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 KCNQ4P56696 695 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 IZUMO3Q5VZ72 239 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 BEST2Q8NFU1 509 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 ZNF473Q8WTR7 871 aaKnown RBP7.68□□□□□ -1.18
SYNE1-208ENST00000367256 RMDN1Q96DB5 314 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 USP21Q9UK80 565 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 PNMA3Q9UL41 463 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 USP17L3A6NCW0 530 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 USP17L4A6NCW7 530 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 TRIM49BA6NDI0 452 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 C6orf10Q5SRN2 563 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 FAM102AQ5T9C2 384 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-208ENST00000367256 USP17L1Q7RTZ2 530 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 C11orf74Q86VG3 221 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 SFR1Q86XK3 245 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 FOPNLQ96NB1 174 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 CCT7Q99832 543 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 MYH8P13535 1937 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 PSMD14O00487 310 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 TLR2O60603 784 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 LAMB3Q13751 1172 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 ITIH4Q14624 930 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 TRIM69Q86WT6 500 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 ATPAF2Q8N5M1 289 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 TUBGCP3Q96CW5 907 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 DYNLL2Q96FJ2 89 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 BFARQ9NZS9 450 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 NPM3O75607 178 aaKnown RBP7.68□□□□□ -1.18
SYNE1-208ENST00000367256 SERPINB9P50453 376 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 BCAR1P56945 870 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 ALX1Q15699 326 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 ARHGAP17Q68EM7 881 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 CNBD2Q96M20 576 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 KRCC1Q9NPI7 259 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-208ENST00000367256 ARAP3Q8WWN8 1544 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 POTEMA6NI47 508 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 STRNO43815 780 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 EIF2AK2P19525 551 aaKnown RBP7.68□□□□□ -1.18
SYNE1-208ENST00000367256 C4BPBP20851 252 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 SERPINB3P29508 390 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 PEX3P56589 373 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 NCALDP61601 193 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 ZNF211Q13398 564 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-208ENST00000367256 TP53BP2Q13625 1128 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 EFHBQ8N7U6 833 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 C19orf60Q96EN9 201 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 HIC2Q96JB3 615 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 HMOX2P30519 316 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 SOX6P35712 828 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 LRRC36Q1X8D7 754 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 BBS2Q9BXC9 721 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 RNF103O00237 685 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 CC2D2BQ6DHV5 1058 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 RCSD1Q6JBY9 416 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 USP17L2Q6R6M4 530 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 PGBD4Q96DM1 585 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 WDR24Q96S15 920 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 PSMC3IPQ9P2W1 217 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-208ENST00000367256 PCSK1NQ9UHG2 260 aa7.68□□□□□ -1.18
SYNE1-208ENST00000367256 CYTH3O43739 400 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 AP3M2P53677 418 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 SF3B3Q15393 1217 aaKnown RBP7.67□□□□□ -1.18
SYNE1-208ENST00000367256 ZNF513Q8N8E2 541 aaPredicted RBP7.67□□□□□ -1.18
SYNE1-208ENST00000367256 ATL2Q8NHH9 583 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 INPP5DQ92835 1189 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 CLMNQ96JQ2 1002 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 PLEKHA5Q9HAU0 1116 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 FBXO2Q9UK22 296 aaPredicted RBP7.67□□□□□ -1.18
SYNE1-208ENST00000367256 MYO3BQ8WXR4 1341 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 MED14O60244 1454 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 KIAA0391O15091 583 aaKnown RBP7.67□□□□□ -1.18
SYNE1-208ENST00000367256 KCNA6P17658 529 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 VSNL1P62760 191 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 DYNLL1P63167 89 aaKnown RBP7.67□□□□□ -1.18
SYNE1-208ENST00000367256 TRIM25Q14258 630 aaKnown RBP7.67□□□□□ -1.18
SYNE1-208ENST00000367256 UGP2Q16851 508 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 KIZQ2M2Z5 673 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 PADI6Q6TGC4 694 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 FAM160B2Q86V87 743 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 DDX47Q9H0S4 455 aaKnown RBP7.67□□□□□ -1.18
SYNE1-208ENST00000367256 ANKRD65E5RJM6 399 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 CDH6P55285 790 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 SUPT20HL1Q3ZLR7 823 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 UNC5CLQ8IV45 518 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 C1orf54Q8WWF1 131 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 CYFIP2Q96F07 1278 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 VPS50Q96JG6 964 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 ZBED2Q9BTP6 218 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 INTS2Q9H0H0 1204 aaKnown RBP7.67□□□□□ -1.18
SYNE1-208ENST00000367256 LIMA1Q9UHB6 759 aaKnown RBP7.67□□□□□ -1.18
SYNE1-208ENST00000367256 SERPIND1P05546 499 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 USP17L8P0C7I0 530 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 CENPAP49450 140 aa7.67□□□□□ -1.18
SYNE1-208ENST00000367256 CLK1P49759 484 aaKnown RBP7.67□□□□□ -1.18
SYNE1-208ENST00000367256 RPS6P62753 249 aaKnown RBP7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms