RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 FESP07332 822 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 TRIM25Q14258 630 aaKnown RBP13.23□□□□□ -0.29
COL6A3-203ENST00000353578 ASPRV1Q53RT3 343 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 FAM47CQ5HY64 1035 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 ZNF786Q8N393 782 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 ANKRD13CQ8N6S4 541 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 TMIEQ8NEW7 156 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 EZH1Q92800 747 aaPredicted RBP13.23□□□□□ -0.29
COL6A3-203ENST00000353578 TP53INP1Q96A56 240 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 WDR11Q9BZH6 1224 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 SAMSN1Q9NSI8 373 aaKnown RBP13.23□□□□□ -0.29
COL6A3-203ENST00000353578 FKBP14Q9NWM8 211 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 IMPAD1Q9NX62 359 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 RXRAP19793 462 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 ALDH18A1P54886 795 aaKnown RBP13.23□□□□□ -0.29
COL6A3-203ENST00000353578 GPS1Q13098 491 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 C16orf72Q14CZ0 275 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 CWF19L1Q69YN2 538 aaKnown RBP13.23□□□□□ -0.29
COL6A3-203ENST00000353578 TAS2R42Q7RTR8 314 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 SNX24Q9Y343 169 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 AK5Q9Y6K8 562 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 PVALEFA0A1B0GWK0 134 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 EFHC1Q5JVL4 640 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 SLFN12LQ6IEE8 588 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 TMPRSS6Q8IU80 811 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 NACC1Q96RE7 527 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 EFCAB1Q9HAE3 211 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 ING3Q9NXR8 418 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 PRDM15P57071 1507 aaPredicted RBP13.23□□□□□ -0.29
COL6A3-203ENST00000353578 SLC16A3O15427 465 aaKnown RBP13.23□□□□□ -0.29
COL6A3-203ENST00000353578 ADCY6O43306 1168 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 AP1G2O75843 785 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 SYTL5Q8TDW5 730 aaPredicted RBP13.23□□□□□ -0.29
COL6A3-203ENST00000353578 PLA2G4AP47712 749 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 SDE2Q6IQ49 451 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 ACAD9Q9H845 621 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 C21orf2O43822 256 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 ATP9AO75110 1047 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 CNOT3O75175 753 aaKnown RBP13.23□□□□□ -0.29
COL6A3-203ENST00000353578 UBE3CQ15386 1083 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 BICRALQ6AI39 1079 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 ZBED8Q8IZ13 594 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 FUKQ8N0W3 1084 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 MCUQ8NE86 351 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 AP3S1Q92572 193 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 STON1Q9Y6Q2 735 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 NINQ8N4C6 2090 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 RAD51BO15315 384 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 RTN3O95197 1032 aaPredicted RBP13.23□□□□□ -0.29
COL6A3-203ENST00000353578 PRAMEP78395 509 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 PPARAQ07869 468 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 PDZK1Q5T2W1 519 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 C11orf88Q6PI97 169 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 FMR1NBQ8N0W7 255 aaPredicted RBP13.23□□□□□ -0.29
COL6A3-203ENST00000353578 ADPGKQ9BRR6 497 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 ASNSD1Q9NWL6 643 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 CNOT7Q9UIV1 285 aaKnown RBP13.23□□□□□ -0.29
COL6A3-203ENST00000353578 MRC2Q9UBG0 1479 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 RNF103O00237 685 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 TYSND1Q2T9J0 566 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 C9orf16Q9BUW7 83 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 BFARQ9NZS9 450 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 KCNJ14Q9UNX9 436 aa13.23□□□□□ -0.29
COL6A3-203ENST00000353578 SCAIQ8N9R8 606 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 TRIM39Q9HCM9 518 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 SLC18A3Q16572 532 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 CRNNQ9UBG3 495 aaPredicted RBP13.22□□□□□ -0.29
COL6A3-203ENST00000353578 YTHDC2Q9H6S0 1430 aaKnown RBP13.22□□□□□ -0.29
COL6A3-203ENST00000353578 PER1O15534 1290 aaPredicted RBP13.22□□□□□ -0.29
COL6A3-203ENST00000353578 AMER2Q8N7J2 671 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 PHACTR1Q9C0D0 580 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 L1RE1Q9UN81 338 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 CPSF1Q10570 1443 aaKnown RBP13.22□□□□□ -0.29
COL6A3-203ENST00000353578 FAM95CA0A1B0GW59 222 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 PLOD1Q02809 727 aaPredicted RBP13.22□□□□□ -0.29
COL6A3-203ENST00000353578 ODR4Q5SWX8 454 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 NME9Q86XW9 330 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 NDUFAF2Q8N183 169 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 APPL2Q8NEU8 664 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 SNX19Q92543 992 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 PACSIN1Q9BY11 444 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 KCNF1Q9H3M0 494 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 PSTPIP2Q9H939 334 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 TPRKBQ9Y3C4 175 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 PSMD3O43242 534 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 CCT8P50990 548 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 CYP27A1Q02318 531 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 TTC16Q8NEE8 873 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 ERP44Q9BS26 406 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 DDX20Q9UHI6 824 aaKnown RBP13.22□□□□□ -0.29
COL6A3-203ENST00000353578 VPS9D1Q9Y2B5 631 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 ZNF862O60290 1169 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 TNFAIP2Q03169 654 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 TOP3AQ13472 1001 aaPredicted RBP13.22□□□□□ -0.29
COL6A3-203ENST00000353578 ADAMTS1Q9UHI8 967 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 GRID1Q9ULK0 1009 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 MECOMQ03112 1051 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 C2CD6Q53TS8 623 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 TFDP1Q14186 410 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 BNC2Q6ZN30 1099 aaPredicted RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms