RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 KLHL3Q9UH77 587 aa18.49■□□□□ 0.55
SMAD4-201ENST00000342988 E9PBE3 544 aa18.49■□□□□ 0.55
SMAD4-201ENST00000342988 DFFAO00273 331 aa18.49■□□□□ 0.55
SMAD4-201ENST00000342988 ST8SIA6P61647 398 aa18.49■□□□□ 0.55
SMAD4-201ENST00000342988 SRP72O76094 671 aaKnown RBP18.49■□□□□ 0.55
SMAD4-201ENST00000342988 RCVRNP35243 200 aa18.49■□□□□ 0.55
SMAD4-201ENST00000342988 BEST2Q8NFU1 509 aa18.49■□□□□ 0.55
SMAD4-201ENST00000342988 HINFPQ9BQA5 517 aa18.49■□□□□ 0.55
SMAD4-201ENST00000342988 TRPM5Q9NZQ8 1165 aa18.49■□□□□ 0.55
SMAD4-201ENST00000342988 NDUFS3O75489 264 aa18.49■□□□□ 0.55
SMAD4-201ENST00000342988 HIST2H2ACQ16777 129 aaPredicted RBP18.49■□□□□ 0.55
SMAD4-201ENST00000342988 HIST2H2AA3Q6FI13 130 aa18.49■□□□□ 0.55
SMAD4-201ENST00000342988 HAVCR1Q96D42 359 aa18.49■□□□□ 0.55
SMAD4-201ENST00000342988 COMMD9Q9P000 198 aa18.49■□□□□ 0.55
SMAD4-201ENST00000342988 ADAM22Q9P0K1 906 aa18.49■□□□□ 0.55
SMAD4-201ENST00000342988 AKT1P31749 480 aa18.49■□□□□ 0.55
SMAD4-201ENST00000342988 RPS7P62081 194 aaKnown RBP18.49■□□□□ 0.55
SMAD4-201ENST00000342988 KDSRQ06136 332 aa18.49■□□□□ 0.55
SMAD4-201ENST00000342988 PROM2Q8N271 834 aa18.49■□□□□ 0.55
SMAD4-201ENST00000342988 MYL10Q9BUA6 226 aa18.49■□□□□ 0.55
SMAD4-201ENST00000342988 CC2D1AQ6P1N0 951 aaPredicted RBP18.48■□□□□ 0.55
SMAD4-201ENST00000342988 KIF20BQ96Q89 1820 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 SEC31AO94979 1220 aaKnown RBP18.48■□□□□ 0.55
SMAD4-201ENST00000342988 NFICP08651 508 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 CHI3L1P36222 383 aaPredicted RBP18.48■□□□□ 0.55
SMAD4-201ENST00000342988 RXRGP48443 463 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 BTN3A2P78410 334 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 SFSWAPQ12872 951 aaKnown RBP18.48■□□□□ 0.55
SMAD4-201ENST00000342988 MACC1Q6ZN28 852 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 PARD6BQ9BYG5 372 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 KANSL1LA0AUZ9 987 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 PFKFB2O60825 505 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 PITPNM2Q9BZ72 1349 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 FAM25AB3EWG3 89 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 FAM25CB3EWG5 89 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 FAM25GB3EWG6 89 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 ZCCHC8Q6NZY4 707 aaKnown RBP18.48■□□□□ 0.55
SMAD4-201ENST00000342988 CDC73Q6P1J9 531 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 CEP44Q9C0F1 390 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 PLEKHA5Q9HAU0 1116 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 RHBDL2Q9NX52 303 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 PCDHB15Q9Y5E8 787 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 ZC3H4Q9UPT8 1303 aaKnown RBP18.48■□□□□ 0.55
SMAD4-201ENST00000342988 SGSM2O43147 1006 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 KCNK10P57789 538 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 CHRNA2Q15822 529 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 ATAD3AQ9NVI7 634 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 SYNPO2Q9UMS6 1093 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 PCDHA4Q9UN74 947 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 CCDC189A1A4V9 331 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 DDX53Q86TM3 631 aaKnown RBP18.48■□□□□ 0.55
SMAD4-201ENST00000342988 FHOD1Q9Y613 1164 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 MAP3K1Q13233 1512 aa18.48■□□□□ 0.55
SMAD4-201ENST00000342988 GADD45BO75293 160 aaPredicted RBP18.47■□□□□ 0.55
SMAD4-201ENST00000342988 C8orf34Q49A92 452 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 LRRC24Q50LG9 513 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 ULK3Q6PHR2 472 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 COMMD2Q86X83 199 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 FRMD6Q96NE9 622 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 CNOT3O75175 753 aaKnown RBP18.47■□□□□ 0.55
SMAD4-201ENST00000342988 GUCY1A2P33402 732 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 GPC5P78333 572 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 SCARA5Q6ZMJ2 495 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 BABAM1Q9NWV8 329 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 ADCY9O60503 1353 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 KPNA4O00629 521 aaPredicted RBP18.47■□□□□ 0.55
SMAD4-201ENST00000342988 SLC39A6Q13433 755 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 TMEM35BQ8NCS4 154 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 HIC2Q96JB3 615 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 TEX46H3BTG2 121 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 EXTL3O43909 919 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 MSH3P20585 1137 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 ARHGEF7Q14155 803 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 MFSD4BQ5TF39 518 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 IPPQ9Y573 584 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 EIF3HO15372 352 aaKnown RBP eCLIP18.47■□□□□ 0.55
SMAD4-201ENST00000342988 CAMKK2Q96RR4 588 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 AP1S1P61966 158 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 KRT31Q15323 416 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 MTERF2Q49AM1 385 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 SCN4BQ8IWT1 228 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 UXS1Q8NBZ7 420 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 ADAM21Q9UKJ8 722 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 PARD3Q8TEW0 1356 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 F8W810 466 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 ZW10O43264 779 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 ENO3P13929 434 aaPredicted RBP18.47■□□□□ 0.55
SMAD4-201ENST00000342988 PTPN1P18031 435 aaKnown RBP18.47■□□□□ 0.55
SMAD4-201ENST00000342988 EIF4A3P38919 411 aaKnown RBP18.47■□□□□ 0.55
SMAD4-201ENST00000342988 C12orf60Q5U649 245 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 ANKRD13CQ8N6S4 541 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 PGBD4Q96DM1 585 aa18.47■□□□□ 0.55
SMAD4-201ENST00000342988 TAF1DQ9H5J8 278 aaPredicted RBP18.47■□□□□ 0.55
SMAD4-201ENST00000342988 hCG_1642624A0A1W2PR95 340 aa18.46■□□□□ 0.55
SMAD4-201ENST00000342988 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.46■□□□□ 0.55
SMAD4-201ENST00000342988 SUPT20HL1Q3ZLR7 823 aa18.46■□□□□ 0.55
SMAD4-201ENST00000342988 SYCP2LQ5T4T6 812 aa18.46■□□□□ 0.55
SMAD4-201ENST00000342988 ANKRD40Q6AI12 368 aa18.46■□□□□ 0.55
SMAD4-201ENST00000342988 SHCBP1Q8NEM2 672 aa18.46■□□□□ 0.55
SMAD4-201ENST00000342988 SLC9A2Q9UBY0 812 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms