RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 CAGE1Q8TC20 777 aa10.83□□□□□ -0.67
HMGB3-201ENST00000325307 IQCDQ96DY2 449 aa10.83□□□□□ -0.67
HMGB3-201ENST00000325307 OSBPL7Q9BZF2 842 aa10.83□□□□□ -0.67
HMGB3-201ENST00000325307 LACTBL1A8MY62 500 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 P4HA2O15460 535 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 GRM5P41594 1212 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 PIK3CAP42336 1068 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 KCNJ6P48051 423 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 RRAGAQ7L523 313 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 FBXL13Q8NEE6 735 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 TAS1R2Q8TE23 839 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 PAWRQ96IZ0 340 aaKnown RBP10.83□□□□□ -0.68
HMGB3-201ENST00000325307 MTMR12Q9C0I1 747 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 TRMT1Q9NXH9 659 aaKnown RBP10.83□□□□□ -0.68
HMGB3-201ENST00000325307 CAPN11Q9UMQ6 739 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 RNF225M0QZC1 329 aaPredicted RBP10.83□□□□□ -0.68
HMGB3-201ENST00000325307 FANCGO15287 622 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 TNNT1P13805 278 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 SELPP16109 830 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 AKAP5P24588 427 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 TRIM60Q495X7 471 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 LRRC8DQ7L1W4 858 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 WDR49Q8IV35 697 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 EHBP1Q8NDI1 1231 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 OR5B17Q8NGF7 314 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 ZNF516Q92618 1163 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 CCDC51Q96ER9 411 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 PPP1R13BQ96KQ4 1090 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 SPAG5Q96R06 1193 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 MCOLN1Q9GZU1 580 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 ZNHIT6Q9NWK9 470 aaKnown RBP10.83□□□□□ -0.68
HMGB3-201ENST00000325307 PTPRJQ12913 1337 aa10.83□□□□□ -0.68
HMGB3-201ENST00000325307 TNNC2P02585 160 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 MNX1P50219 401 aaPredicted RBP10.82□□□□□ -0.68
HMGB3-201ENST00000325307 ZBED6P86452 979 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 TLE2Q04725 743 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 ENPEPQ07075 957 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 DUOXA2Q1HG44 320 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 FAM26DQ5JW98 314 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 KLHDC7AQ5VTJ3 777 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 RNF169Q8NCN4 708 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 ANKRD36BP1Q96IX9 119 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 CEP72Q9P209 647 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 UCHL3P15374 230 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 SLC10A6Q3KNW5 377 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 FIGNQ5HY92 759 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 TDRD10Q5VZ19 366 aaKnown RBP10.82□□□□□ -0.68
HMGB3-201ENST00000325307 GJB7Q6PEY0 223 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 USP38Q8NB14 1042 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 OR8K1Q8NGG5 319 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 C11orf49Q9H6J7 331 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 ERVK-5Q9HDB9 667 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 PLCB1Q9NQ66 1216 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 CHST12Q9NRB3 414 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 RAB20Q9NX57 234 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 RECQL4O94761 1208 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 NOL4O94818 638 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 NFICP08651 508 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 KRT19P08727 400 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 TRPC3Q13507 836 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 EPC2Q52LR7 807 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 WDR44Q5JSH3 913 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 JADE1Q6IE81 842 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 HACE1Q8IYU2 909 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 ANKLE1Q8NAG6 615 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 BAG1Q99933 345 aaPredicted RBP10.82□□□□□ -0.68
HMGB3-201ENST00000325307 PI4K2AQ9BTU6 479 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 IFIH1Q9BYX4 1025 aaKnown RBP10.82□□□□□ -0.68
HMGB3-201ENST00000325307 PPP1R12CQ9BZL4 782 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 TTYH3Q9C0H2 523 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 HIPK3Q9H422 1215 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 ABHD10Q9NUJ1 306 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 KLK14Q9P0G3 267 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 SH3BP1Q9Y3L3 701 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 IPPQ9Y573 584 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 PCDHB2Q9Y5E7 798 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 FHOD1Q9Y613 1164 aa10.82□□□□□ -0.68
HMGB3-201ENST00000325307 A0A1W2PQJ5 194 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 LRRN2O75325 713 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 CD4P01730 458 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 HLA-DRAP01903 254 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 AP3M2P53677 418 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 CLDN10P78369 228 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 TMEM132DQ14C87 1099 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 ZACNQ401N2 412 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 UBXN11Q5T124 520 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 PPM1KQ8N3J5 372 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 SEMA4DQ92854 862 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 ELMO3Q96BJ8 720 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 KIF12Q96FN5 646 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 PANX2Q96RD6 677 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 ADAM2Q99965 735 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 IMPG2Q9BZV3 1241 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 GANQ9H2C0 597 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 ASB7Q9H672 318 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 APEX2Q9UBZ4 518 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 ARID5AQ03989 594 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 ARHGAP44Q17R89 818 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 TRAPPC11Q7Z392 1133 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 EFCAB13Q8IY85 973 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms