RNA–Protein interactions for RNA: YKR100C

SKG1, Transcript of Transmembrane protein with a role in cell wall polymer composition, yeast

Gene SKG1, Length 1,068 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SKG1	YKR100C	CLB6	P32943	380 aa		3.74	□□□□□ -1.81
SKG1	YKR100C	NSG1	P38837	291 aa		3.74	□□□□□ -1.81
SKG1	YKR100C	PEX18	P38855	283 aa		3.74	□□□□□ -1.81
SKG1	YKR100C	RSM27	P53305	110 aa		3.74	□□□□□ -1.81
SKG1	YKR100C	CWC22	P53333	577 aa	Known RBP	3.74	□□□□□ -1.81
SKG1	YKR100C	YPL245W	Q12179	454 aa	Known RBP	3.74	□□□□□ -1.81
SKG1	YKR100C	YDL199C	Q12407	687 aa		3.74	□□□□□ -1.81
SKG1	YKR100C	RAS2	P01120	322 aa	Known RBP	3.73	□□□□□ -1.81
SKG1	YKR100C	COS2	P0CX12	379 aa		3.73	□□□□□ -1.81
SKG1	YKR100C	COS3	P0CX13	379 aa		3.73	□□□□□ -1.81
SKG1	YKR100C	SUA7	P29055	345 aa	Predicted RBP	3.73	□□□□□ -1.81
SKG1	YKR100C	RIM1	P32445	135 aa	Known RBP	3.73	□□□□□ -1.81
SKG1	YKR100C	ECT1	P33412	323 aa		3.73	□□□□□ -1.81
SKG1	YKR100C	SDH4	P37298	181 aa		3.73	□□□□□ -1.81
SKG1	YKR100C	GPX2	P38143	162 aa		3.73	□□□□□ -1.81
SKG1	YKR100C	BMT2	P38278	337 aa		3.73	□□□□□ -1.81
SKG1	YKR100C	SMF2	P38778	549 aa		3.73	□□□□□ -1.81
SKG1	YKR100C	COS4	P43542	379 aa		3.73	□□□□□ -1.81
SKG1	YKR100C	TOS2	P50078	622 aa		3.73	□□□□□ -1.81
SKG1	YKR100C	TAF6	P53040	516 aa		3.73	□□□□□ -1.81
SKG1	YKR100C	COX20	Q04935	205 aa		3.73	□□□□□ -1.81
SKG1	YKR100C	FIT3	Q08907	204 aa		3.73	□□□□□ -1.81
SKG1	YKR100C	PRM7	Q12459	698 aa		3.73	□□□□□ -1.81
SKG1	YKR100C	STE2	D6VTK4	431 aa		3.72	□□□□□ -1.81
SKG1	YKR100C	ZUO1	P32527	433 aa	Known RBP	3.72	□□□□□ -1.81
SKG1	YKR100C	YJR012C	P47087	207 aa		3.72	□□□□□ -1.81
SKG1	YKR100C	YHR212W-A	P0CX91	67 aa		3.71	□□□□□ -1.82
SKG1	YKR100C	CPR2	P23285	205 aa		3.71	□□□□□ -1.82
SKG1	YKR100C	YHR177W	P38867	453 aa		3.71	□□□□□ -1.82
SKG1	YKR100C	YFL012W	P43580	148 aa		3.71	□□□□□ -1.82
SKG1	YKR100C	YFR054C	P43622	192 aa		3.71	□□□□□ -1.82
SKG1	YKR100C	LSG1	P53145	640 aa	Known RBP	3.71	□□□□□ -1.82
SKG1	YKR100C	YMR166C	Q03829	368 aa		3.71	□□□□□ -1.82
SKG1	YKR100C	MRX4	Q12467	430 aa		3.71	□□□□□ -1.82
SKG1	YKR100C	CDC37	P06101	506 aa	Known RBP	3.7	□□□□□ -1.82
SKG1	YKR100C	SCO1	P23833	295 aa		3.7	□□□□□ -1.82
SKG1	YKR100C	YER034W	P40022	185 aa	Known RBP	3.7	□□□□□ -1.82
SKG1	YKR100C	YFR035C	P43608	114 aa		3.7	□□□□□ -1.82
SKG1	YKR100C	SYF2	P53277	215 aa	Predicted RBP	3.7	□□□□□ -1.82
SKG1	YKR100C	YHC1	Q05900	231 aa	Known RBP	3.7	□□□□□ -1.82
SKG1	YKR100C	YPS3	Q12303	508 aa		3.7	□□□□□ -1.82
SKG1	YKR100C	YOP1	Q12402	180 aa		3.7	□□□□□ -1.82
SKG1	YKR100C	OPI3	P05375	206 aa		3.69	□□□□□ -1.82
SKG1	YKR100C	YER184C	P39961	794 aa		3.69	□□□□□ -1.82
SKG1	YKR100C	DDI1	P40087	428 aa		3.69	□□□□□ -1.82
SKG1	YKR100C	SOL1	P50278	321 aa		3.69	□□□□□ -1.82
SKG1	YKR100C	RRN9	P53437	365 aa		3.69	□□□□□ -1.82
SKG1	YKR100C	RPL21A	Q02753	160 aa	Known RBP	3.69	□□□□□ -1.82
SKG1	YKR100C	RRB1	Q04225	511 aa	Known RBP	3.69	□□□□□ -1.82
SKG1	YKR100C	YLR345W	Q06137	509 aa		3.69	□□□□□ -1.82
SKG1	YKR100C	RTC5	Q12108	567 aa	Known RBP	3.69	□□□□□ -1.82
SKG1	YKR100C	RPL21B	Q12672	160 aa	Known RBP	3.69	□□□□□ -1.82
SKG1	YKR100C	YAL064W-B	O13512	126 aa		3.68	□□□□□ -1.82
SKG1	YKR100C	YHR035W	P38769	630 aa		3.68	□□□□□ -1.82
SKG1	YKR100C	PFS2	P42841	465 aa	Known RBP	3.68	□□□□□ -1.82
SKG1	YKR100C	PMT5	P52867	743 aa		3.68	□□□□□ -1.82
SKG1	YKR100C	UFD1	P53044	361 aa		3.68	□□□□□ -1.82
SKG1	YKR100C	GEP7	P53171	287 aa		3.68	□□□□□ -1.82
SKG1	YKR100C	VHT1	P53241	593 aa		3.68	□□□□□ -1.82
SKG1	YKR100C	MCT1	Q12283	360 aa		3.68	□□□□□ -1.82
SKG1	YKR100C	RPL39	P04650	51 aa		3.67	□□□□□ -1.82
SKG1	YKR100C	GIT1	P25346	518 aa		3.67	□□□□□ -1.82
SKG1	YKR100C	SPO23	P33757	523 aa		3.67	□□□□□ -1.82
SKG1	YKR100C	TIR2	P33890	251 aa		3.67	□□□□□ -1.82
SKG1	YKR100C	GEP4	P38812	185 aa		3.67	□□□□□ -1.82
SKG1	YKR100C	CHL4	P38907	458 aa		3.67	□□□□□ -1.82
SKG1	YKR100C	BOL2	P53082	120 aa		3.67	□□□□□ -1.82
SKG1	YKR100C	GOT1	Q03554	138 aa		3.67	□□□□□ -1.82
SKG1	YKR100C	SPC19	Q03954	165 aa		3.67	□□□□□ -1.82
SKG1	YKR100C	GRH1	Q04410	372 aa	Known RBP	3.67	□□□□□ -1.82
SKG1	YKR100C	PCL9	Q12477	304 aa		3.67	□□□□□ -1.82
SKG1	YKR100C	MRPL23	Q12487	163 aa	Predicted RBP	3.67	□□□□□ -1.82
SKG1	YKR100C	TPK3	P05986	398 aa		3.66	□□□□□ -1.82
SKG1	YKR100C	IME2	P32581	645 aa		3.66	□□□□□ -1.82
SKG1	YKR100C	FMT1	P32785	401 aa		3.66	□□□□□ -1.82
SKG1	YKR100C	WSS1	P38838	269 aa		3.66	□□□□□ -1.82
SKG1	YKR100C	KEG1	P43614	200 aa		3.66	□□□□□ -1.82
SKG1	YKR100C	CCC1	P47818	322 aa		3.66	□□□□□ -1.82
SKG1	YKR100C	RPS12	P48589	143 aa	Known RBP	3.66	□□□□□ -1.82
SKG1	YKR100C	YML6	P51998	286 aa		3.66	□□□□□ -1.82
SKG1	YKR100C	CDH1	P53197	566 aa		3.66	□□□□□ -1.82
SKG1	YKR100C	REX2	P54964	269 aa	Known RBP	3.66	□□□□□ -1.82
SKG1	YKR100C	SWP1	Q02795	286 aa		3.66	□□□□□ -1.82
SKG1	YKR100C	UAF30	Q08747	228 aa		3.66	□□□□□ -1.82
SKG1	YKR100C	RPL6B	P05739	176 aa	Known RBP	3.65	□□□□□ -1.83
SKG1	YKR100C	YKT6	P36015	200 aa	Known RBP	3.65	□□□□□ -1.83
SKG1	YKR100C	COS9	P36034	407 aa		3.65	□□□□□ -1.83
SKG1	YKR100C	QDR3	P38227	689 aa		3.65	□□□□□ -1.83
SKG1	YKR100C	SPP381	P38282	291 aa	Predicted RBP	3.65	□□□□□ -1.83
SKG1	YKR100C	PEX12	Q04370	399 aa		3.65	□□□□□ -1.83
SKG1	YKR100C	RFM1	Q12192	310 aa		3.65	□□□□□ -1.83
SKG1	YKR100C	TPI1	P00942	248 aa	Known RBP	3.64	□□□□□ -1.83
SKG1	YKR100C	RPL12A	P0CX53	165 aa	Known RBP	3.64	□□□□□ -1.83
SKG1	YKR100C	RPL12B	P0CX54	165 aa		3.64	□□□□□ -1.83
SKG1	YKR100C	CKI1	P20485	582 aa		3.64	□□□□□ -1.83
SKG1	YKR100C	CBF5	P33322	483 aa	Known RBP RIP-Chip data	3.64	□□□□□ -1.83	not detected
SKG1	YKR100C	LSM12	P38828	187 aa	Known RBP	3.64	□□□□□ -1.83
SKG1	YKR100C	VPS60	Q03390	229 aa		3.64	□□□□□ -1.83
SKG1	YKR100C	SPG4	Q04438	115 aa		3.64	□□□□□ -1.83
SKG1	YKR100C	QCR6	P00127	147 aa		3.63	□□□□□ -1.83

Retrieved 100 of 5,963 RNA–protein pairs in 12.9 ms