RNA–Protein interactions for RNA: YJR060W

CBF1, Transcript of Basic helix-loop-helix (bHLH) protein, yeast

Gene CBF1, Length 1,056 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CBF1	YJR060W	RAF1	Q06891	181 aa		4.63	□□□□□ -1.67
CBF1	YJR060W	HMS1	Q12398	434 aa		4.63	□□□□□ -1.67
CBF1	YJR060W	FRE6	Q12473	712 aa		4.63	□□□□□ -1.67
CBF1	YJR060W	YHR214C-E	Q8TGK0	99 aa		4.63	□□□□□ -1.67
CBF1	YJR060W	TRA1	P38811	3744 aa		4.62	□□□□□ -1.67
CBF1	YJR060W	NFT1	P0CE68	1218 aa		4.62	□□□□□ -1.67
CBF1	YJR060W	VMA6	P32366	345 aa	Known RBP	4.62	□□□□□ -1.67
CBF1	YJR060W	MIA40	P36046	403 aa		4.62	□□□□□ -1.67
CBF1	YJR060W	SRP102	P36057	244 aa	Predicted RBP	4.62	□□□□□ -1.67
CBF1	YJR060W	HOT13	P36078	116 aa		4.62	□□□□□ -1.67
CBF1	YJR060W	MAL32	P38158	584 aa		4.62	□□□□□ -1.67
CBF1	YJR060W	PTH1	P38876	190 aa	Known RBP	4.62	□□□□□ -1.67
CBF1	YJR060W	MDM31	P38880	579 aa		4.62	□□□□□ -1.67
CBF1	YJR060W	IPT1	P38954	527 aa		4.62	□□□□□ -1.67
CBF1	YJR060W	PHO90	P39535	881 aa		4.62	□□□□□ -1.67
CBF1	YJR060W	SFH5	P47008	294 aa		4.62	□□□□□ -1.67
CBF1	YJR060W	PCP1	P53259	346 aa		4.62	□□□□□ -1.67
CBF1	YJR060W	MAL12	P53341	584 aa		4.62	□□□□□ -1.67
CBF1	YJR060W	RRN9	P53437	365 aa		4.62	□□□□□ -1.67
CBF1	YJR060W	EOS1	P53938	366 aa		4.62	□□□□□ -1.67
CBF1	YJR060W	TMA20	P89886	181 aa	Predicted RBP	4.62	□□□□□ -1.67
CBF1	YJR060W	CTS2	Q06350	511 aa		4.62	□□□□□ -1.67
CBF1	YJR060W	MIM1	Q08176	113 aa		4.62	□□□□□ -1.67
CBF1	YJR060W	SYC1	Q08553	188 aa	Predicted RBP	4.62	□□□□□ -1.67
CBF1	YJR060W	YGK3	Q12222	375 aa	Predicted RBP	4.62	□□□□□ -1.67
CBF1	YJR060W	RRI1	Q12468	440 aa		4.62	□□□□□ -1.67
CBF1	YJR060W	SPS4	P09937	338 aa		4.61	□□□□□ -1.67
CBF1	YJR060W	MDM10	P18409	493 aa		4.61	□□□□□ -1.67
CBF1	YJR060W	CLB2	P24869	491 aa		4.61	□□□□□ -1.67
CBF1	YJR060W	GIT1	P25346	518 aa		4.61	□□□□□ -1.67
CBF1	YJR060W	ELO2	P25358	347 aa		4.61	□□□□□ -1.67
CBF1	YJR060W	FUN19	P28003	413 aa	Predicted RBP	4.61	□□□□□ -1.67
CBF1	YJR060W	PPA2	P28239	310 aa		4.61	□□□□□ -1.67
CBF1	YJR060W	ECT1	P33412	323 aa		4.61	□□□□□ -1.67
CBF1	YJR060W	YPK3	P38070	525 aa		4.61	□□□□□ -1.67
CBF1	YJR060W	THI2	P38141	450 aa		4.61	□□□□□ -1.67
CBF1	YJR060W	GOS1	P38736	223 aa		4.61	□□□□□ -1.67
CBF1	YJR060W	POP2	P39008	433 aa		4.61	□□□□□ -1.67
CBF1	YJR060W	YMR144W	P40214	342 aa	Known RBP	4.61	□□□□□ -1.67
CBF1	YJR060W	AVT7	P40501	490 aa		4.61	□□□□□ -1.67
CBF1	YJR060W	IDP2	P41939	412 aa		4.61	□□□□□ -1.67
CBF1	YJR060W	ADO1	P47143	340 aa	Known RBP	4.61	□□□□□ -1.67
CBF1	YJR060W	YGR149W	P48236	432 aa		4.61	□□□□□ -1.67
CBF1	YJR060W	NUP49	Q02199	472 aa		4.61	□□□□□ -1.67
CBF1	YJR060W	YDR102C	Q03864	110 aa		4.61	□□□□□ -1.67
CBF1	YJR060W	YMR315W	Q04869	349 aa	Known RBP	4.61	□□□□□ -1.67
CBF1	YJR060W	MRX8	Q05473	314 aa		4.61	□□□□□ -1.67
CBF1	YJR060W	NEJ1	Q06148	342 aa		4.61	□□□□□ -1.67
CBF1	YJR060W	TAZ1	Q06510	381 aa		4.61	□□□□□ -1.67
CBF1	YJR060W	FOL3	Q12676	427 aa	Predicted RBP	4.61	□□□□□ -1.67
CBF1	YJR060W	SCEI	P03882	235 aa		4.6	□□□□□ -1.67
CBF1	YJR060W	ATG15	P25641	520 aa		4.6	□□□□□ -1.67
CBF1	YJR060W	AFG1	P32317	509 aa		4.6	□□□□□ -1.67
CBF1	YJR060W	VPH2	P32341	215 aa		4.6	□□□□□ -1.67
CBF1	YJR060W	NDC1	P32500	655 aa		4.6	□□□□□ -1.67
CBF1	YJR060W	MTR2	P34232	184 aa	Known RBP	4.6	□□□□□ -1.67
CBF1	YJR060W	DTR1	P38125	572 aa		4.6	□□□□□ -1.67
CBF1	YJR060W	RIO2	P40160	425 aa	Known RBP	4.6	□□□□□ -1.67
CBF1	YJR060W	RBL2	P48606	106 aa	Known RBP	4.6	□□□□□ -1.67
CBF1	YJR060W	VOA1	P53262	265 aa		4.6	□□□□□ -1.67
CBF1	YJR060W	DUG3	P53871	357 aa		4.6	□□□□□ -1.67
CBF1	YJR060W	SKO1	Q02100	647 aa		4.6	□□□□□ -1.67
CBF1	YJR060W	RPL6A	Q02326	176 aa	Known RBP	4.6	□□□□□ -1.67
CBF1	YJR060W	DIG2	Q03373	323 aa	Known RBP	4.6	□□□□□ -1.67
CBF1	YJR060W	YDR387C	Q04162	555 aa		4.6	□□□□□ -1.67
CBF1	YJR060W	YLR173W	Q06247	608 aa		4.6	□□□□□ -1.67
CBF1	YJR060W	ATG17	Q06410	417 aa		4.6	□□□□□ -1.67
CBF1	YJR060W	TPO3	Q06451	622 aa		4.6	□□□□□ -1.67
CBF1	YJR060W	IPK1	Q06667	281 aa		4.6	□□□□□ -1.67
CBF1	YJR060W	GSH2	Q08220	491 aa		4.6	□□□□□ -1.67
CBF1	YJR060W	IZH2	Q12442	317 aa		4.6	□□□□□ -1.67
CBF1	YJR060W	NAM2	P11325	894 aa		4.59	□□□□□ -1.67
CBF1	YJR060W	DBF2	P22204	572 aa		4.59	□□□□□ -1.67
CBF1	YJR060W	RPI1	P23250	407 aa	Known RBP	4.59	□□□□□ -1.67
CBF1	YJR060W	ITR1	P30605	584 aa		4.59	□□□□□ -1.67
CBF1	YJR060W	ECM4	P36156	370 aa		4.59	□□□□□ -1.67
CBF1	YJR060W	YGP1	P38616	354 aa	Known RBP	4.59	□□□□□ -1.67
CBF1	YJR060W	PRS3	P38689	320 aa	Known RBP	4.59	□□□□□ -1.67
CBF1	YJR060W	MBB1	P39534	108 aa		4.59	□□□□□ -1.67
CBF1	YJR060W	PFS2	P42841	465 aa	Known RBP	4.59	□□□□□ -1.67
CBF1	YJR060W	MOB2	P43563	287 aa		4.59	□□□□□ -1.67
CBF1	YJR060W	ATG27	P46989	271 aa		4.59	□□□□□ -1.67
CBF1	YJR060W	LYS20	P48570	428 aa	Known RBP	4.59	□□□□□ -1.67
CBF1	YJR060W	SIP18	P50263	79 aa		4.59	□□□□□ -1.67
CBF1	YJR060W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	4.59	□□□□□ -1.67	not detected
CBF1	YJR060W	GRX5	Q02784	150 aa		4.59	□□□□□ -1.67
CBF1	YJR060W	RCE1	Q03530	315 aa		4.59	□□□□□ -1.67
CBF1	YJR060W	API2	Q04413	109 aa		4.59	□□□□□ -1.67
CBF1	YJR060W	MED2	Q12124	431 aa		4.59	□□□□□ -1.67
CBF1	YJR060W	STF1	P01098	86 aa		4.58	□□□□□ -1.68
CBF1	YJR060W	OPI3	P05375	206 aa		4.58	□□□□□ -1.68
CBF1	YJR060W	KIN28	P06242	306 aa		4.58	□□□□□ -1.68
CBF1	YJR060W	RPL35A	P0CX84	120 aa	Known RBP	4.58	□□□□□ -1.68
CBF1	YJR060W	RPL35B	P0CX85	120 aa	Known RBP	4.58	□□□□□ -1.68
CBF1	YJR060W	PUT3	P25502	979 aa	Predicted RBP	4.58	□□□□□ -1.68
CBF1	YJR060W	YHL037C	P38733	133 aa		4.58	□□□□□ -1.68
CBF1	YJR060W	NVJ1	P38881	321 aa		4.58	□□□□□ -1.68
CBF1	YJR060W	AIM10	P39965	576 aa	Known RBP	4.58	□□□□□ -1.68
CBF1	YJR060W	DDI1	P40087	428 aa		4.58	□□□□□ -1.68
CBF1	YJR060W	UBP8	P50102	471 aa		4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 22.3 ms