RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 INTS10Q9NVR2 710 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 HERC5Q9UII4 1024 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 CDC23Q9UJX2 597 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 H0Y626 953 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 KRT33AO76009 404 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ZBED1O96006 694 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 LPLP06858 475 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 PGK2P07205 417 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 TRIM27P14373 513 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 GEMIN4P57678 1058 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 GUCY1A3Q02108 690 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 RARS2Q5T160 578 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 SMC5Q8IY18 1101 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 TERB1Q8NA31 727 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 KCNV2Q8TDN2 545 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 KCNE4Q8WWG9 221 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 MOCOSQ96EN8 888 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 DCUN1D1Q96GG9 259 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ACOX2Q99424 681 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 FEM1AQ9BSK4 669 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 SEC31BQ9NQW1 1179 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ING3Q9NXR8 418 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 TMPRSS11EQ9UL52 423 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 MORC2Q9Y6X9 1032 aaPredicted RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 SDK2Q58EX2 2172 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 WDR19Q8NEZ3 1342 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 KPNA6O60684 536 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 HUS1O60921 280 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 PPP1R37O75864 691 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 WARSP23381 471 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ACADLP28330 430 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 HALP42357 657 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 PDAP1Q13442 181 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 THOC5Q13769 683 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 GNA13Q14344 377 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 NARS2Q96I59 477 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 FAM167AQ96KS9 214 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 GPR101Q96P66 508 aaPredicted RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 MKNK1Q9BUB5 465 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 CARD6Q9BX69 1037 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 EPN3Q9H201 632 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ANTXR1Q9H6X2 564 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 EURLQ9NYK6 297 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ARHGAP28Q9P2N2 729 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 RCOR1Q9UKL0 485 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 PCDHGC3Q9UN70 934 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 GPR75-ASB3A0A0A6YYF3 556 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 TESPA1A2RU30 521 aaPredicted RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 XYLBO75191 536 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 FYNP06241 537 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 VCAM1P19320 739 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 MSH2P43246 934 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 NPTX2P47972 431 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 PDE1AP54750 535 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 TSTA3Q13630 321 aaPredicted RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 KRT24Q2M2I5 525 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 FAM98BQ52LJ0 330 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 MFSD4BQ5TF39 518 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 UGT3A1Q6NUS8 523 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 SIX5Q8N196 739 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ATG16L2Q8NAA4 619 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 SCFD2Q8WU76 684 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 DDX1Q92499 740 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 TRPC7Q9HCX4 862 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 LRRC4BQ9NT99 713 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 CNTN3Q9P232 1028 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 SLC25A13Q9UJS0 675 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 DNM3Q9UQ16 869 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 CRYL1Q9Y2S2 319 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ASB3Q9Y575 518 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 TTC41PQ6P2S7 1318 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 CCDC169A6NNP5 214 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 DDAH1O94760 285 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ENO2P09104 434 aaPredicted RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 SMARCA1P28370 1054 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 HAND2P61296 217 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 CCT2P78371 535 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ATG16L1Q676U5 607 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 PEX26Q7Z412 305 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ZCCHC7Q8N3Z6 543 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 SUCLG2Q96I99 432 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 NUDCD1Q96RS6 583 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ASCC2Q9H1I8 757 aaPredicted RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 FAM96AQ9H5X1 160 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 BRD9Q9H8M2 597 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 VAT1LQ9HCJ6 419 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ECHDC1Q9NTX5 307 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 HFM1A2PYH4 1435 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 UBE4BO95155 1302 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 PEX1O43933 1283 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 DIAPH2O60879 1101 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 HSD3B2P26439 372 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 DCKP27707 260 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 EIF2B2P49770 351 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 UBE3AQ05086 875 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ALDH1L2Q3SY69 923 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 AARS2Q5JTZ9 985 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 MON1BQ7L1V2 547 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 C11orf74Q86VG3 221 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 CATSPER3Q86XQ3 398 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms