RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 HINFPQ9BQA5 517 aa18.22■□□□□ 0.51
SHKBP1-215ENST00000597649 POLR3FQ9H1D9 316 aaPredicted RBP18.22■□□□□ 0.51
SHKBP1-215ENST00000597649 GPRC5CQ9NQ84 441 aa18.22■□□□□ 0.51
SHKBP1-215ENST00000597649 LIMCH1Q9UPQ0 1083 aa18.22■□□□□ 0.51
SHKBP1-215ENST00000597649 SF3B1O75533 1304 aaKnown RBP eCLIP18.22■□□□□ 0.51
SHKBP1-215ENST00000597649 BAG4O95429 457 aaKnown RBP18.21■□□□□ 0.51
SHKBP1-215ENST00000597649 CTDNEP1O95476 244 aa18.21■□□□□ 0.51
SHKBP1-215ENST00000597649 HNRNPA1P09651 372 aaKnown RBP eCLIP18.21■□□□□ 0.51
SHKBP1-215ENST00000597649 MCM2P49736 904 aa18.21■□□□□ 0.51
SHKBP1-215ENST00000597649 TUSC3Q13454 348 aa18.21■□□□□ 0.51
SHKBP1-215ENST00000597649 PPM1LQ5SGD2 360 aa18.21■□□□□ 0.51
SHKBP1-215ENST00000597649 ZSCAN31Q96LW9 406 aaPredicted RBP18.21■□□□□ 0.51
SHKBP1-215ENST00000597649 NAP1L4Q99733 375 aaKnown RBP18.21■□□□□ 0.51
SHKBP1-215ENST00000597649 HCFC1R1Q9NWW0 138 aa18.21■□□□□ 0.51
SHKBP1-215ENST00000597649 TPCN1Q9ULQ1 816 aa18.21■□□□□ 0.51
SHKBP1-215ENST00000597649 PCDHA12Q9UN75 941 aa18.21■□□□□ 0.51
SHKBP1-215ENST00000597649 USP20Q9Y2K6 914 aa18.21■□□□□ 0.51
SHKBP1-215ENST00000597649 ZMYM2Q9UBW7 1377 aa18.2■□□□□ 0.5
SHKBP1-215ENST00000597649 FAM170BA6NMN3 283 aa18.2■□□□□ 0.5
SHKBP1-215ENST00000597649 WNT7AO00755 349 aa18.2■□□□□ 0.5
SHKBP1-215ENST00000597649 MLF2Q15773 248 aaPredicted RBP18.2■□□□□ 0.5
SHKBP1-215ENST00000597649 PSMD5Q16401 504 aa18.2■□□□□ 0.5
SHKBP1-215ENST00000597649 MAEAQ7L5Y9 396 aa18.2■□□□□ 0.5
SHKBP1-215ENST00000597649 KXD1Q9BQD3 176 aa18.2■□□□□ 0.5
SHKBP1-215ENST00000597649 FZD8Q9H461 694 aa18.2■□□□□ 0.5
SHKBP1-215ENST00000597649 SPATA6Q9NWH7 488 aaPredicted RBP18.2■□□□□ 0.5
SHKBP1-215ENST00000597649 SNTG2Q9NY99 539 aa18.2■□□□□ 0.5
SHKBP1-215ENST00000597649 ARID2Q68CP9 1835 aa18.19■□□□□ 0.5
SHKBP1-215ENST00000597649 FDPSP14324 419 aaKnown RBP18.19■□□□□ 0.5
SHKBP1-215ENST00000597649 HOXA9P31269 272 aa18.19■□□□□ 0.5
SHKBP1-215ENST00000597649 RSPO4Q2I0M5 234 aaPredicted RBP18.19■□□□□ 0.5
SHKBP1-215ENST00000597649 ZNF528Q3MIS6 628 aa18.19■□□□□ 0.5
SHKBP1-215ENST00000597649 LIN9Q5TKA1 542 aa18.19■□□□□ 0.5
SHKBP1-215ENST00000597649 RSPO2Q6UXX9 243 aaPredicted RBP18.19■□□□□ 0.5
SHKBP1-215ENST00000597649 PPP4R3CPQ6ZMV5 832 aa18.19■□□□□ 0.5
SHKBP1-215ENST00000597649 SLC7A14Q8TBB6 771 aa18.19■□□□□ 0.5
SHKBP1-215ENST00000597649 NOTCH4Q99466 2003 aa18.19■□□□□ 0.5
SHKBP1-215ENST00000597649 PLA2G2FQ9BZM2 168 aa18.19■□□□□ 0.5
SHKBP1-215ENST00000597649 PDZD7Q9H5P4 517 aa18.19■□□□□ 0.5
SHKBP1-215ENST00000597649 TTC12Q9H892 705 aaPredicted RBP18.19■□□□□ 0.5
SHKBP1-215ENST00000597649 DNMT3BQ9UBC3 853 aaKnown RBP18.19■□□□□ 0.5
SHKBP1-215ENST00000597649 POLIQ9UNA4 740 aa18.19■□□□□ 0.5
SHKBP1-215ENST00000597649 STK36Q9NRP7 1315 aa18.19■□□□□ 0.5
SHKBP1-215ENST00000597649 F5P12259 2224 aa18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 LRRIQ4A6NIV6 560 aa18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 SHISA7A6NL88 538 aa18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 USO1O60763 962 aaKnown RBP18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 KINO60870 393 aaKnown RBP18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 EDN1P05305 212 aa18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 THP07101 528 aa18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 SPATA31C1P0DKV0 1188 aa18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 OR1D2P34982 312 aa18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 PRKCQQ04759 706 aa18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 CSTF1Q05048 431 aaKnown RBP18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 RAB33AQ14088 237 aa18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 UBXN2BQ14CS0 331 aa18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 FAM187BQ17R55 369 aa18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 VARS2Q5ST30 1063 aaKnown RBP18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 AXDND1Q5T1B0 1012 aaPredicted RBP18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 CDCA2Q69YH5 1023 aaPredicted RBP18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 CD300LGQ6UXG3 332 aa18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 MTSS1LQ765P7 747 aa18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 NPAS3Q8IXF0 933 aa18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 MTMR9Q96QG7 549 aa18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 BCO2Q9BYV7 579 aa18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 SH2B1Q9NRF2 756 aaPredicted RBP18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 FBXO4Q9UKT5 387 aa18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 KMT2BQ9UMN6 2715 aaPredicted RBP18.18■□□□□ 0.5
SHKBP1-215ENST00000597649 MYH15Q9Y2K3 1946 aa18.17■□□□□ 0.5
SHKBP1-215ENST00000597649 LAMTOR5O43504 91 aa18.17■□□□□ 0.5
SHKBP1-215ENST00000597649 PFKFB2O60825 505 aa18.17■□□□□ 0.5
SHKBP1-215ENST00000597649 XYLBO75191 536 aa18.17■□□□□ 0.5
SHKBP1-215ENST00000597649 CDKL5O76039 1030 aa18.17■□□□□ 0.5
SHKBP1-215ENST00000597649 RECQL4O94761 1208 aa18.17■□□□□ 0.5
SHKBP1-215ENST00000597649 XRCC6P12956 609 aaKnown RBP eCLIP18.17■□□□□ 0.5
SHKBP1-215ENST00000597649 XBP1P17861 261 aa18.17■□□□□ 0.5
SHKBP1-215ENST00000597649 FZD5Q13467 585 aa18.17■□□□□ 0.5
SHKBP1-215ENST00000597649 CALCRLQ16602 461 aa18.17■□□□□ 0.5
SHKBP1-215ENST00000597649 ME3Q16798 604 aa18.17■□□□□ 0.5
SHKBP1-215ENST00000597649 NOSTRINQ8IVI9 506 aa18.17■□□□□ 0.5
SHKBP1-215ENST00000597649 ING5Q8WYH8 240 aa18.17■□□□□ 0.5
SHKBP1-215ENST00000597649 BSNDQ8WZ55 320 aa18.17■□□□□ 0.5
SHKBP1-215ENST00000597649 PRIMPOLQ96LW4 560 aa18.17■□□□□ 0.5
SHKBP1-215ENST00000597649 OSBPL6Q9BZF3 934 aa18.17■□□□□ 0.5
SHKBP1-215ENST00000597649 LTB4R2Q9NPC1 389 aa18.17■□□□□ 0.5
SHKBP1-215ENST00000597649 PRMT7Q9NVM4 692 aaPredicted RBP18.17■□□□□ 0.5
SHKBP1-215ENST00000597649 ORC3Q9UBD5 711 aaPredicted RBP18.17■□□□□ 0.5
SHKBP1-215ENST00000597649 CHD8Q9HCK8 2581 aa18.17■□□□□ 0.5
SHKBP1-215ENST00000597649 POU2F2P09086 479 aa18.16■□□□□ 0.5
SHKBP1-215ENST00000597649 FGFR3P22607 806 aa18.16■□□□□ 0.5
SHKBP1-215ENST00000597649 TARSP26639 723 aaKnown RBP18.16■□□□□ 0.5
SHKBP1-215ENST00000597649 TXKP42681 527 aa18.16■□□□□ 0.5
SHKBP1-215ENST00000597649 SLC5A9Q2M3M2 681 aa18.16■□□□□ 0.5
SHKBP1-215ENST00000597649 UVSSAQ2YD98 709 aa18.16■□□□□ 0.5
SHKBP1-215ENST00000597649 EEF1DP3Q658K8 133 aa18.16■□□□□ 0.5
SHKBP1-215ENST00000597649 NECAB1Q8N987 351 aa18.16■□□□□ 0.5
SHKBP1-215ENST00000597649 ZBTB44Q8NCP5 570 aa18.16■□□□□ 0.5
SHKBP1-215ENST00000597649 NELL1Q92832 810 aa18.16■□□□□ 0.5
SHKBP1-215ENST00000597649 CLDN23Q96B33 292 aa18.16■□□□□ 0.5
SHKBP1-215ENST00000597649 ZFHX4Q86UP3 3567 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms