RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 SCN5AQ14524 2016 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 KLK7P49862 253 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 YARSP54577 528 aaKnown RBP15.88■□□□□ 0.13
VRK3-212ENST00000596814 CETN1Q12798 172 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 DSC3Q14574 896 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 EXOC3L4Q17RC7 722 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 LMBRD2Q68DH5 695 aaPredicted RBP15.88■□□□□ 0.13
VRK3-212ENST00000596814 KRT39Q6A163 491 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 GBP6Q6ZN66 633 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 WDR49Q8IV35 697 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 APOL6Q9BWW8 343 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 TMEM117Q9H0C3 514 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 FAM105AQ9NUU6 356 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 TMEM39AQ9NV64 488 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 HES2Q9Y543 173 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 IPPQ9Y573 584 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.88■□□□□ 0.13
VRK3-212ENST00000596814 PTPRJQ12913 1337 aa15.87■□□□□ 0.13
VRK3-212ENST00000596814 PMM2O15305 246 aa15.87■□□□□ 0.13
VRK3-212ENST00000596814 MGEA5O60502 916 aa15.87■□□□□ 0.13
VRK3-212ENST00000596814 NBNO60934 754 aa15.87■□□□□ 0.13
VRK3-212ENST00000596814 RECQL4O94761 1208 aa15.87■□□□□ 0.13
VRK3-212ENST00000596814 PARNO95453 639 aaKnown RBP15.87■□□□□ 0.13
VRK3-212ENST00000596814 PTMAP06454 111 aaKnown RBP15.87■□□□□ 0.13
VRK3-212ENST00000596814 KCNMA1Q12791 1236 aa15.87■□□□□ 0.13
VRK3-212ENST00000596814 TRIM14Q14142 442 aa15.87■□□□□ 0.13
VRK3-212ENST00000596814 SLC10A6Q3KNW5 377 aa15.87■□□□□ 0.13
VRK3-212ENST00000596814 UBE2Q1Q7Z7E8 422 aa15.87■□□□□ 0.13
VRK3-212ENST00000596814 HACE1Q8IYU2 909 aa15.87■□□□□ 0.13
VRK3-212ENST00000596814 SNX27Q96L92 541 aa15.87■□□□□ 0.13
VRK3-212ENST00000596814 LSM14BQ9BX40 385 aaKnown RBP15.87■□□□□ 0.13
VRK3-212ENST00000596814 WNT8AQ9H1J5 351 aa15.87■□□□□ 0.13
VRK3-212ENST00000596814 ASB7Q9H672 318 aa15.87■□□□□ 0.13
VRK3-212ENST00000596814 PCDHB2Q9Y5E7 798 aa15.87■□□□□ 0.13
VRK3-212ENST00000596814 PDCD11Q14690 1871 aaKnown RBP15.87■□□□□ 0.13
VRK3-212ENST00000596814 TRIP11Q15643 1979 aa15.87■□□□□ 0.13
VRK3-212ENST00000596814 TTC26A0AVF1 554 aa15.86■□□□□ 0.13
VRK3-212ENST00000596814 LACTBL1A8MY62 500 aa15.86■□□□□ 0.13
VRK3-212ENST00000596814 MEFVO15553 781 aaPredicted RBP15.86■□□□□ 0.13
VRK3-212ENST00000596814 TRIM21P19474 475 aaKnown RBP15.86■□□□□ 0.13
VRK3-212ENST00000596814 RAB27AP51159 221 aa15.86■□□□□ 0.13
VRK3-212ENST00000596814 AP3M2P53677 418 aa15.86■□□□□ 0.13
VRK3-212ENST00000596814 SV2AQ7L0J3 742 aa15.86■□□□□ 0.13
VRK3-212ENST00000596814 CD302Q8IX05 232 aa15.86■□□□□ 0.13
VRK3-212ENST00000596814 EFCAB13Q8IY85 973 aa15.86■□□□□ 0.13
VRK3-212ENST00000596814 SMG8Q8ND04 991 aaKnown RBP15.86■□□□□ 0.13
VRK3-212ENST00000596814 ZNF516Q92618 1163 aa15.86■□□□□ 0.13
VRK3-212ENST00000596814 ADAM2Q99965 735 aa15.86■□□□□ 0.13
VRK3-212ENST00000596814 TRAIPQ9BWF2 469 aa15.86■□□□□ 0.13
VRK3-212ENST00000596814 PLEKHA5Q9HAU0 1116 aa15.86■□□□□ 0.13
VRK3-212ENST00000596814 TPM1P09493 284 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 TMEM191BP0C7N4 346 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 AKAP5P24588 427 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 CYP2C18P33260 490 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 CCL23P55773 120 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 TFAMQ00059 246 aaKnown RBP15.85■□□□□ 0.13
VRK3-212ENST00000596814 TBX2Q13207 712 aaPredicted RBP15.85■□□□□ 0.13
VRK3-212ENST00000596814 BIRC3Q13489 604 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 ZACNQ401N2 412 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 PLEKHG4Q58EX7 1191 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 C15orf39Q6ZRI6 1047 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 PPFIBP1Q86W92 1011 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 NEK11Q8NG66 645 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 OR5B17Q8NGF7 314 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 IQCDQ96DY2 449 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 SCLYQ96I15 445 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 FAM84AQ96KN4 292 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 NUP58Q9BVL2 599 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 FTHL17Q9BXU8 183 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 FAM207AQ9NSI2 230 aaPredicted RBP15.85■□□□□ 0.13
VRK3-212ENST00000596814 C4BPAP04003 597 aaKnown RBP15.85■□□□□ 0.13
VRK3-212ENST00000596814 GYPCP04921 128 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 NFICP08651 508 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 SKIP12755 728 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 SLC9A1P19634 815 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 PON1P27169 355 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 GSDMDP57764 484 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 GPNMBQ14956 572 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 DUOXA2Q1HG44 320 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 EPC2Q52LR7 807 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 FIGNQ5HY92 759 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 TDRD10Q5VZ19 366 aaKnown RBP15.85■□□□□ 0.13
VRK3-212ENST00000596814 JADE1Q6IE81 842 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 FBXL13Q8NEE6 735 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 ANKRD36BP1Q96IX9 119 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 MTMR12Q9C0I1 747 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 INTS2Q9H0H0 1204 aaKnown RBP15.85■□□□□ 0.13
VRK3-212ENST00000596814 PRDM5Q9NQX1 630 aaPredicted RBP15.85■□□□□ 0.13
VRK3-212ENST00000596814 PARP2Q9UGN5 583 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 COQ4Q9Y3A0 265 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 ALPK3Q96L96 1907 aa15.85■□□□□ 0.13
VRK3-212ENST00000596814 TET1Q8NFU7 2136 aa15.84■□□□□ 0.13
VRK3-212ENST00000596814 TNNC2P02585 160 aa15.84■□□□□ 0.13
VRK3-212ENST00000596814 ITGA4P13612 1032 aa15.84■□□□□ 0.13
VRK3-212ENST00000596814 PIK3CAP42336 1068 aa15.84■□□□□ 0.13
VRK3-212ENST00000596814 TMEM132DQ14C87 1099 aa15.84■□□□□ 0.13
VRK3-212ENST00000596814 TRIM65Q6PJ69 517 aa15.84■□□□□ 0.13
VRK3-212ENST00000596814 FAM43BQ6ZT52 329 aaPredicted RBP15.84■□□□□ 0.13
VRK3-212ENST00000596814 CCDC186Q7Z3E2 898 aa15.84■□□□□ 0.13
VRK3-212ENST00000596814 NT5DC4Q86YG4 428 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms