RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 FOXD4L5Q5VV16 416 aaPredicted RBP16.56■□□□□ 0.24
TRIM28-205ENST00000595028 ANKRD54Q6NXT1 300 aa16.56■□□□□ 0.24
TRIM28-205ENST00000595028 MPZL3Q6UWV2 235 aa16.56■□□□□ 0.24
TRIM28-205ENST00000595028 ZPBP2Q6X784 338 aa16.56■□□□□ 0.24
TRIM28-205ENST00000595028 BMP8AQ7Z5Y6 402 aa16.56■□□□□ 0.24
TRIM28-205ENST00000595028 RNF135Q8IUD6 432 aa16.56■□□□□ 0.24
TRIM28-205ENST00000595028 FOXD4L4Q8WXT5 416 aaPredicted RBP16.56■□□□□ 0.24
TRIM28-205ENST00000595028 EDAQ92838 391 aa16.56■□□□□ 0.24
TRIM28-205ENST00000595028 CASP10Q92851 521 aa16.56■□□□□ 0.24
TRIM28-205ENST00000595028 PRRX2Q99811 253 aa16.56■□□□□ 0.24
TRIM28-205ENST00000595028 COLEC11Q9BWP8 271 aa16.56■□□□□ 0.24
TRIM28-205ENST00000595028 CXCL16Q9H2A7 254 aa16.56■□□□□ 0.24
TRIM28-205ENST00000595028 USP15Q9Y4E8 981 aaPredicted RBP16.56■□□□□ 0.24
TRIM28-205ENST00000595028 PTPRZ1P23471 2315 aaPredicted RBP16.56■□□□□ 0.24
TRIM28-205ENST00000595028 PLXNA3P51805 1871 aa16.55■□□□□ 0.24
TRIM28-205ENST00000595028 CASTOR2A6NHX0 329 aa16.55■□□□□ 0.24
TRIM28-205ENST00000595028 K7ENM7 598 aa16.55■□□□□ 0.24
TRIM28-205ENST00000595028 TOM1L1O75674 476 aa16.55■□□□□ 0.24
TRIM28-205ENST00000595028 THP07101 528 aa16.55■□□□□ 0.24
TRIM28-205ENST00000595028 SCP2P22307 547 aa16.55■□□□□ 0.24
TRIM28-205ENST00000595028 DDIT3P35638 169 aa16.55■□□□□ 0.24
TRIM28-205ENST00000595028 HSP90AA2PQ14568 343 aaPredicted RBP16.55■□□□□ 0.24
TRIM28-205ENST00000595028 NOLC1Q14978 699 aaKnown RBP eCLIP16.55■□□□□ 0.24
TRIM28-205ENST00000595028 GLRA4Q5JXX5 417 aa16.55■□□□□ 0.24
TRIM28-205ENST00000595028 RRAGBQ5VZM2 374 aa16.55■□□□□ 0.24
TRIM28-205ENST00000595028 FUT10Q6P4F1 479 aa16.55■□□□□ 0.24
TRIM28-205ENST00000595028 HAUS6Q7Z4H7 955 aa16.55■□□□□ 0.24
TRIM28-205ENST00000595028 ZBTB33Q86T24 672 aa16.55■□□□□ 0.24
TRIM28-205ENST00000595028 MYCT1Q8N699 235 aa16.55■□□□□ 0.24
TRIM28-205ENST00000595028 SPRYD3Q8NCJ5 442 aa16.55■□□□□ 0.24
TRIM28-205ENST00000595028 PBXIP1Q96AQ6 731 aa16.55■□□□□ 0.24
TRIM28-205ENST00000595028 CCDC94Q9BW85 323 aaPredicted RBP16.55■□□□□ 0.24
TRIM28-205ENST00000595028 TOPORSQ9NS56 1045 aaPredicted RBP16.55■□□□□ 0.24
TRIM28-205ENST00000595028 FAM86C1Q9NVL1 165 aa16.55■□□□□ 0.24
TRIM28-205ENST00000595028 ANKFY1Q9P2R3 1169 aa16.55■□□□□ 0.24
TRIM28-205ENST00000595028 CACNG4Q9UBN1 327 aa16.55■□□□□ 0.24
TRIM28-205ENST00000595028 ADAM28Q9UKQ2 775 aa16.55■□□□□ 0.24
TRIM28-205ENST00000595028 VWA8A3KMH1 1905 aa16.55■□□□□ 0.24
TRIM28-205ENST00000595028 KMT2EQ8IZD2 1858 aa16.54■□□□□ 0.24
TRIM28-205ENST00000595028 SPTLC2O15270 562 aa16.54■□□□□ 0.24
TRIM28-205ENST00000595028 LILRB3O75022 631 aa16.54■□□□□ 0.24
TRIM28-205ENST00000595028 PPP6R2O75170 966 aa16.54■□□□□ 0.24
TRIM28-205ENST00000595028 YEATS4O95619 227 aa16.54■□□□□ 0.24
TRIM28-205ENST00000595028 HARSP12081 509 aaKnown RBP16.54■□□□□ 0.24
TRIM28-205ENST00000595028 HOXB8P17481 243 aaPredicted RBP16.54■□□□□ 0.24
TRIM28-205ENST00000595028 GLUD2P49448 558 aa16.54■□□□□ 0.24
TRIM28-205ENST00000595028 YARSP54577 528 aaKnown RBP16.54■□□□□ 0.24
TRIM28-205ENST00000595028 PKP1Q13835 747 aa16.54■□□□□ 0.24
TRIM28-205ENST00000595028 SYCE2Q6PIF2 218 aa16.54■□□□□ 0.24
TRIM28-205ENST00000595028 CCDC73Q6ZRK6 1079 aa16.54■□□□□ 0.24
TRIM28-205ENST00000595028 TMEM87AQ8NBN3 555 aa16.54■□□□□ 0.24
TRIM28-205ENST00000595028 PPP1R10Q96QC0 940 aaKnown RBP16.54■□□□□ 0.24
TRIM28-205ENST00000595028 FIZ1Q96SL8 496 aa16.54■□□□□ 0.24
TRIM28-205ENST00000595028 POP1Q99575 1024 aaKnown RBP16.54■□□□□ 0.24
TRIM28-205ENST00000595028 PAAF1Q9BRP4 392 aa16.54■□□□□ 0.24
TRIM28-205ENST00000595028 TCHPQ9BT92 498 aa16.54■□□□□ 0.24
TRIM28-205ENST00000595028 ZHX3Q9H4I2 956 aa16.54■□□□□ 0.24
TRIM28-205ENST00000595028 MRPL17Q9NRX2 175 aaKnown RBP16.54■□□□□ 0.24
TRIM28-205ENST00000595028 SF3B1O75533 1304 aaKnown RBP eCLIP16.53■□□□□ 0.242e-6■■■■■ 59.5
TRIM28-205ENST00000595028 A0A087X0B3 334 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 TMEM221A6NGB7 291 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 M0R296 226 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 TRAK2O60296 914 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 KIF4AO95239 1232 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 CNPP09543 421 aaKnown RBP16.53■□□□□ 0.24
TRIM28-205ENST00000595028 STAT6P42226 847 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 OSTNP61366 133 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 DSG1Q02413 1049 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 XKR4Q5GH76 650 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 TRIM67Q6ZTA4 783 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 TAS1R1Q7RTX1 841 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 PPFIBP1Q86W92 1011 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 SLC22A17Q8WUG5 538 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 SUSD6Q92537 303 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 RABGGTAQ92696 567 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 BICD1Q96G01 975 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 ZBTB45Q96K62 511 aaPredicted RBP16.53■□□□□ 0.24
TRIM28-205ENST00000595028 KLHL5Q96PQ7 755 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 EMILIN2Q9BXX0 1053 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 GPR62Q9BZJ7 368 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 S1PR5Q9H228 398 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 DZANK1Q9NVP4 752 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 TFIP11Q9UBB9 837 aaKnown RBP16.53■□□□□ 0.24
TRIM28-205ENST00000595028 SSX2IPQ9Y2D8 614 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 VPS13AQ96RL7 3174 aa16.53■□□□□ 0.24
TRIM28-205ENST00000595028 C2CD2LO14523 706 aa16.52■□□□□ 0.24
TRIM28-205ENST00000595028 HNRNPDLO14979 420 aaKnown RBP16.52■□□□□ 0.24
TRIM28-205ENST00000595028 PIGRP01833 764 aa16.52■□□□□ 0.24
TRIM28-205ENST00000595028 EPCAMP16422 314 aa16.52■□□□□ 0.24
TRIM28-205ENST00000595028 MCL1Q07820 350 aa16.52■□□□□ 0.24
TRIM28-205ENST00000595028 FOXD4L6Q3SYB3 417 aaPredicted RBP16.52■□□□□ 0.24
TRIM28-205ENST00000595028 KIAA0319Q5VV43 1072 aa16.52■□□□□ 0.24
TRIM28-205ENST00000595028 FOXD4L3Q6VB84 417 aaPredicted RBP16.52■□□□□ 0.24
TRIM28-205ENST00000595028 SV2BQ7L1I2 683 aa16.52■□□□□ 0.24
TRIM28-205ENST00000595028 SUGP1Q8IWZ8 645 aaKnown RBP16.52■□□□□ 0.24
TRIM28-205ENST00000595028 B3GALT6Q96L58 329 aa16.52■□□□□ 0.24
TRIM28-205ENST00000595028 CHST7Q9NS84 486 aa16.52■□□□□ 0.24
TRIM28-205ENST00000595028 TBX20Q9UMR3 447 aa16.52■□□□□ 0.24
TRIM28-205ENST00000595028 DENND4AQ7Z401 1863 aa16.52■□□□□ 0.23
TRIM28-205ENST00000595028 WDR87Q6ZQQ6 2873 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms