RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 CDC42EP1Q00587 391 aa21.43■■□□□ 1.02
TRIM47-204ENST00000587339 TDRD10Q5VZ19 366 aaKnown RBP21.43■■□□□ 1.02
TRIM47-204ENST00000587339 CDT1Q9H211 546 aa21.43■■□□□ 1.02
TRIM47-204ENST00000587339 CENPFP49454 3210 aa21.43■■□□□ 1.02
TRIM47-204ENST00000587339 ERLIN2O94905 339 aa21.43■■□□□ 1.02
TRIM47-204ENST00000587339 CYP2C9P11712 490 aa21.43■■□□□ 1.02
TRIM47-204ENST00000587339 CAP1Q01518 475 aa21.43■■□□□ 1.02
TRIM47-204ENST00000587339 BMS1Q14692 1282 aaKnown RBP21.43■■□□□ 1.02
TRIM47-204ENST00000587339 KIZQ2M2Z5 673 aa21.43■■□□□ 1.02
TRIM47-204ENST00000587339 GNASQ5JWF2 1037 aa21.43■■□□□ 1.02
TRIM47-204ENST00000587339 SRGAP1Q7Z6B7 1085 aa21.43■■□□□ 1.02
TRIM47-204ENST00000587339 HELQQ8TDG4 1101 aa21.43■■□□□ 1.02
TRIM47-204ENST00000587339 KAT5Q92993 513 aa21.43■■□□□ 1.02
TRIM47-204ENST00000587339 L2HGDHQ9H9P8 463 aa21.43■■□□□ 1.02
TRIM47-204ENST00000587339 MACROD2A1Z1Q3 448 aa21.42■■□□□ 1.02
TRIM47-204ENST00000587339 PJA2O43164 708 aa21.42■■□□□ 1.02
TRIM47-204ENST00000587339 SEPT4O43236 478 aa21.42■■□□□ 1.02
TRIM47-204ENST00000587339 TRPA1O75762 1119 aa21.42■■□□□ 1.02
TRIM47-204ENST00000587339 PIK3CAP42336 1068 aa21.42■■□□□ 1.02
TRIM47-204ENST00000587339 AP3M2P53677 418 aa21.42■■□□□ 1.02
TRIM47-204ENST00000587339 GJA9P57773 515 aa21.42■■□□□ 1.02
TRIM47-204ENST00000587339 ADAM17P78536 824 aa21.42■■□□□ 1.02
TRIM47-204ENST00000587339 SURF1Q15526 300 aa21.42■■□□□ 1.02
TRIM47-204ENST00000587339 WDR44Q5JSH3 913 aa21.42■■□□□ 1.02
TRIM47-204ENST00000587339 WDR49Q8IV35 697 aa21.42■■□□□ 1.02
TRIM47-204ENST00000587339 FAM212AQ96EL1 285 aa21.42■■□□□ 1.02
TRIM47-204ENST00000587339 KREMEN1Q96MU8 473 aa21.42■■□□□ 1.02
TRIM47-204ENST00000587339 PI4K2AQ9BTU6 479 aa21.42■■□□□ 1.02
TRIM47-204ENST00000587339 SPC25Q9HBM1 224 aa21.42■■□□□ 1.02
TRIM47-204ENST00000587339 NAGPAQ9UK23 515 aa21.42■■□□□ 1.02
TRIM47-204ENST00000587339 GINS2Q9Y248 185 aa21.42■■□□□ 1.02
TRIM47-204ENST00000587339 CTAGE9A4FU28 777 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 MYADML2A6NDP7 307 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 KPNA6O60684 536 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 HLA-DRAP01903 254 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 ARF4P18085 180 aaPredicted RBP21.41■■□□□ 1.02
TRIM47-204ENST00000587339 OSTNP61366 133 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 CACNB2Q08289 660 aaPredicted RBP21.41■■□□□ 1.02
TRIM47-204ENST00000587339 TMEM62Q0P6H9 643 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 C10orf76Q5T2E6 689 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 C7orf31Q8N865 590 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 OR5B17Q8NGF7 314 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 SECISBP2LQ93073 1101 aaKnown RBP21.41■■□□□ 1.02
TRIM47-204ENST00000587339 CPB2Q96IY4 423 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 CFHR5Q9BXR6 569 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 C1orf112Q9NSG2 853 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 RNF186Q9NXI6 227 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 RARBP10826 455 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 USP8P40818 1118 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 GCNT1Q02742 428 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 TRIM32Q13049 653 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 HIC1Q14526 733 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 ALKBH5Q6P6C2 394 aaKnown RBP21.41■■□□□ 1.02
TRIM47-204ENST00000587339 CEP120Q8N960 986 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 FAM81BQ96LP2 452 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 ADAMTS10Q9H324 1103 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 PDZD7Q9H5P4 517 aa21.41■■□□□ 1.02
TRIM47-204ENST00000587339 C17orf102A2RUQ5 167 aa21.4■■□□□ 1.02
TRIM47-204ENST00000587339 GPR25O00155 361 aa21.4■■□□□ 1.02
TRIM47-204ENST00000587339 TREHO43280 583 aa21.4■■□□□ 1.02
TRIM47-204ENST00000587339 TSPAN1O60635 241 aa21.4■■□□□ 1.02
TRIM47-204ENST00000587339 PHACTR2O75167 634 aa21.4■■□□□ 1.02
TRIM47-204ENST00000587339 VNN1O95497 513 aa21.4■■□□□ 1.02
TRIM47-204ENST00000587339 PGK1P00558 417 aa21.4■■□□□ 1.02
TRIM47-204ENST00000587339 MCF2P10911 925 aa21.4■■□□□ 1.02
TRIM47-204ENST00000587339 GNAT1P11488 350 aa21.4■■□□□ 1.02
TRIM47-204ENST00000587339 GTF2F1P35269 517 aaKnown RBP eCLIP21.4■■□□□ 1.021e-5■□□□□ 8.9
TRIM47-204ENST00000587339 NAB2Q15742 525 aa21.4■■□□□ 1.02
TRIM47-204ENST00000587339 RUFY4Q6ZNE9 571 aa21.4■■□□□ 1.02
TRIM47-204ENST00000587339 ENOSF1Q7L5Y1 443 aa21.4■■□□□ 1.02
TRIM47-204ENST00000587339 SHC3Q92529 594 aa21.4■■□□□ 1.02
TRIM47-204ENST00000587339 TATDN2Q93075 761 aa21.4■■□□□ 1.02
TRIM47-204ENST00000587339 GCOM2Q9BZD3 368 aaPredicted RBP21.4■■□□□ 1.02
TRIM47-204ENST00000587339 HDAC6Q9UBN7 1215 aa21.4■■□□□ 1.02
TRIM47-204ENST00000587339 GPR32O75388 356 aa21.39■■□□□ 1.02
TRIM47-204ENST00000587339 GLYCTKQ8IVS8 523 aa21.39■■□□□ 1.02
TRIM47-204ENST00000587339 FAM71AQ8IYT1 594 aa21.39■■□□□ 1.02
TRIM47-204ENST00000587339 ELMO3Q96BJ8 720 aa21.39■■□□□ 1.02
TRIM47-204ENST00000587339 NAPGQ99747 312 aaPredicted RBP21.39■■□□□ 1.02
TRIM47-204ENST00000587339 RPF1Q9H9Y2 349 aaKnown RBP21.39■■□□□ 1.02
TRIM47-204ENST00000587339 DDX3XO00571 662 aaKnown RBP eCLIP21.39■■□□□ 1.012e-7■□□□□ 9.6
TRIM47-204ENST00000587339 ELNP15502 786 aa21.39■■□□□ 1.01
TRIM47-204ENST00000587339 DUOXA2Q1HG44 320 aa21.39■■□□□ 1.01
TRIM47-204ENST00000587339 DNAJB3Q8WWF6 145 aa21.39■■□□□ 1.01
TRIM47-204ENST00000587339 MTG1Q9BT17 334 aaPredicted RBP21.39■■□□□ 1.01
TRIM47-204ENST00000587339 SYT11Q9BT88 431 aa21.39■■□□□ 1.01
TRIM47-204ENST00000587339 A0A1B0GUA9 196 aa21.38■■□□□ 1.01
TRIM47-204ENST00000587339 HOXD10P28358 340 aa21.38■■□□□ 1.01
TRIM47-204ENST00000587339 MAP2K2P36507 400 aa21.38■■□□□ 1.01
TRIM47-204ENST00000587339 ZNF200P98182 395 aaPredicted RBP21.38■■□□□ 1.01
TRIM47-204ENST00000587339 NCBP1Q09161 790 aaKnown RBP21.38■■□□□ 1.01
TRIM47-204ENST00000587339 MTMR12Q9C0I1 747 aa21.38■■□□□ 1.01
TRIM47-204ENST00000587339 UPF3AQ9H1J1 476 aaKnown RBP21.38■■□□□ 1.01
TRIM47-204ENST00000587339 CASP8AP2Q9UKL3 1982 aa21.38■■□□□ 1.01
TRIM47-204ENST00000587339 IL18RAPO95256 599 aa21.37■■□□□ 1.01
TRIM47-204ENST00000587339 CLTAP09496 248 aa21.37■■□□□ 1.01
TRIM47-204ENST00000587339 STAG3L1P0CL83 205 aa21.37■■□□□ 1.01
TRIM47-204ENST00000587339 CXCL8P10145 99 aa21.37■■□□□ 1.01
TRIM47-204ENST00000587339 PRKAR2AP13861 404 aaKnown RBP21.37■■□□□ 1.01
TRIM47-204ENST00000587339 NCOA4Q13772 614 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms