RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 RPGRIP1Q96KN7 1286 aa8.59□□□□□ -1.03
CDH3-209ENST00000569080 SNX27Q96L92 541 aa8.59□□□□□ -1.03
CDH3-209ENST00000569080 ZMAT2Q96NC0 199 aaKnown RBP8.59□□□□□ -1.03
CDH3-209ENST00000569080 REEP2Q9BRK0 252 aa8.59□□□□□ -1.03
CDH3-209ENST00000569080 COLEC11Q9BWP8 271 aa8.59□□□□□ -1.03
CDH3-209ENST00000569080 EMILIN2Q9BXX0 1053 aa8.59□□□□□ -1.03
CDH3-209ENST00000569080 CCSER1Q9C0I3 900 aa8.59□□□□□ -1.03
CDH3-209ENST00000569080 GOLGA2P5Q9HBQ8 144 aa8.59□□□□□ -1.03
CDH3-209ENST00000569080 MAN1C1Q9NR34 630 aa8.59□□□□□ -1.03
CDH3-209ENST00000569080 ODF2LQ9ULJ1 636 aa8.59□□□□□ -1.03
CDH3-209ENST00000569080 RBM19Q9Y4C8 960 aaKnown RBP8.59□□□□□ -1.03
CDH3-209ENST00000569080 TSC2P49815 1807 aa8.59□□□□□ -1.03
CDH3-209ENST00000569080 ANK1P16157 1881 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 SMIM28A0A1B0GU29 152 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 FAM189A1O60320 539 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 TOM1L1O75674 476 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 GLUD1P00367 558 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 C1RP00736 705 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 ADH1AP07327 375 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 MCF2P10911 925 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 KCNE1P15382 129 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 SP100P23497 879 aaPredicted RBP8.58□□□□□ -1.04
CDH3-209ENST00000569080 KLRC2P26717 231 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 MTHFRP42898 656 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 CLCNKBP51801 687 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 MCL1Q07820 350 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 MCM6Q14566 821 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 NOLC1Q14978 699 aaKnown RBP eCLIP8.58□□□□□ -1.04
CDH3-209ENST00000569080 PTPN21Q16825 1174 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 UPP1Q16831 310 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 TMEM132AQ24JP5 1023 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 USP41Q3LFD5 358 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 CES5AQ6NT32 575 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 LILRA6Q6PI73 481 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 PRSS55Q6UWB4 352 aaPredicted RBP8.58□□□□□ -1.04
CDH3-209ENST00000569080 MPZL3Q6UWV2 235 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 TMC5Q6UXY8 1006 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 ZPBP2Q6X784 338 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 C15orf39Q6ZRI6 1047 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 HFE2Q6ZVN8 426 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 GPR149Q86SP6 731 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 GPBP1Q86WP2 473 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 PIK3R5Q8WYR1 880 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 RAD54LQ92698 747 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 EDAQ92838 391 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 SNX21Q969T3 373 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 ZNF707Q96C28 371 aaPredicted RBP8.58□□□□□ -1.04
CDH3-209ENST00000569080 EPSTI1Q96J88 318 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 CDK5RAP3Q96JB5 506 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 ZBTB45Q96K62 511 aaPredicted RBP8.58□□□□□ -1.04
CDH3-209ENST00000569080 USP28Q96RU2 1077 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 RHOBTB2Q9BYZ6 727 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.58□□□□□ -1.04
CDH3-209ENST00000569080 CNTN3Q9P232 1028 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 FNIP2Q9P278 1114 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 SSX2IPQ9Y2D8 614 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 ZDBF2Q9HCK1 2354 aa8.58□□□□□ -1.04
CDH3-209ENST00000569080 MYO15AQ9UKN7 3530 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 A0A087X0B3 334 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 ADAM12O43184 909 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 TGM5O43548 720 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 N4BP1O75113 896 aaKnown RBP8.57□□□□□ -1.04
CDH3-209ENST00000569080 NR1I2O75469 434 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 RFPL2O75678 378 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 PIGRP01833 764 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 RPL17P18621 184 aaKnown RBP8.57□□□□□ -1.04
CDH3-209ENST00000569080 FGFR3P22607 806 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 MARCKSP29966 332 aaPredicted RBP8.57□□□□□ -1.04
CDH3-209ENST00000569080 UBA7P41226 1012 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 OSTNP61366 133 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 ZXDAP98168 799 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 SPECC1Q5M775 1068 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 SLC39A4Q6P5W5 647 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 LNX1Q8TBB1 728 aaPredicted RBP8.57□□□□□ -1.04
CDH3-209ENST00000569080 RIN2Q8WYP3 895 aaPredicted RBP8.57□□□□□ -1.04
CDH3-209ENST00000569080 LARP4BQ92615 738 aaKnown RBP8.57□□□□□ -1.04
CDH3-209ENST00000569080 ASIC4Q96FT7 647 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 CALML4Q96GE6 196 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 RIPOR3Q96MK2 946 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 CLSTN3Q9BQT9 956 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 TTPALQ9BTX7 342 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 CCDC94Q9BW85 323 aaPredicted RBP8.57□□□□□ -1.04
CDH3-209ENST00000569080 LARSQ9P2J5 1176 aaKnown RBP8.57□□□□□ -1.04
CDH3-209ENST00000569080 ANKFY1Q9P2R3 1169 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 FBXW11Q9UKB1 542 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 USTQ9Y2C2 406 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 SRPRBQ9Y5M8 271 aaKnown RBP8.57□□□□□ -1.04
CDH3-209ENST00000569080 VPS13AQ96RL7 3174 aa8.57□□□□□ -1.04
CDH3-209ENST00000569080 DOCK6Q96HP0 2047 aa8.56□□□□□ -1.04
CDH3-209ENST00000569080 NOTCH4Q99466 2003 aa8.56□□□□□ -1.04
CDH3-209ENST00000569080 DMDP11532 3685 aa8.56□□□□□ -1.04
CDH3-209ENST00000569080 USP34Q70CQ2 3546 aa8.56□□□□□ -1.04
CDH3-209ENST00000569080 STX6O43752 255 aa8.56□□□□□ -1.04
CDH3-209ENST00000569080 TADA2AO75478 443 aa8.56□□□□□ -1.04
CDH3-209ENST00000569080 PPP1R37O75864 691 aa8.56□□□□□ -1.04
CDH3-209ENST00000569080 HARSP12081 509 aaKnown RBP8.56□□□□□ -1.04
CDH3-209ENST00000569080 TKTP29401 623 aaKnown RBP8.56□□□□□ -1.04
CDH3-209ENST00000569080 NASPP49321 788 aaPredicted RBP8.56□□□□□ -1.04
CDH3-209ENST00000569080 SMTNP53814 917 aa8.56□□□□□ -1.04
CDH3-209ENST00000569080 CREMQ03060 361 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms