RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 CERS4Q9HA82 394 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 ARFGAP3Q9NP61 516 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 DCP1AQ9NPI6 582 aaPredicted RBP3.42□□□□□ -1.86
VPS35-209ENST00000568642 OXSMQ9NWU1 459 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 TMEM160Q9NX00 188 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 DACT1Q9NYF0 836 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 EPS15L1Q9UBC2 864 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 TBC1D29Q9UFV1 150 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 GPN3Q9UHW5 284 aaPredicted RBP3.42□□□□□ -1.86
VPS35-209ENST00000568642 HERC5Q9UII4 1024 aaKnown RBP3.42□□□□□ -1.86
VPS35-209ENST00000568642 DAGLAQ9Y4D2 1042 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 PCDHA8Q9Y5H6 950 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 NPFFR2Q9Y5X5 522 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 CNTNAP4Q9C0A0 1308 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 USP24Q9UPU5 2620 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 CACNA1SQ13698 1873 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 ALPK3Q96L96 1907 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 PTPN13Q12923 2485 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 FSD2A1L4K1 749 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 TRIM64A6NGJ6 449 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 TRIM64BA6NI03 449 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 B4E1Z4 1266 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 AGRPO00253 132 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 WNT9AO14904 365 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 ARHGAP6O43182 974 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 XPOTO43592 962 aaKnown RBP3.41□□□□□ -1.86
VPS35-209ENST00000568642 MSCO60682 206 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 HMMRO75330 724 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 PTP4A3O75365 173 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 WNT11O96014 354 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 MMP10P09238 476 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 TSPY4P0CV99 314 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 TSPY10P0CW01 314 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 ATF7P17544 494 aaPredicted RBP3.41□□□□□ -1.86
VPS35-209ENST00000568642 KCNA3P22001 575 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 PEX19P40855 299 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 NPTX2P47972 431 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 ZNF131P52739 623 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 SEC24CP53992 1094 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 UBASH3AP57075 661 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 PHC1P78364 1004 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 IFI35P80217 286 aaPredicted RBP3.41□□□□□ -1.86
VPS35-209ENST00000568642 ICA1Q05084 483 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 PMS2P11Q13670 270 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 LRRC14Q15048 493 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 ATP2B3Q16720 1220 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 LRIT3Q3SXY7 679 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 ANKRD39Q53RE8 183 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 ZNF648Q5T619 568 aaPredicted RBP3.41□□□□□ -1.86
VPS35-209ENST00000568642 SAMD5Q5TGI4 173 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 DARS2Q6PI48 645 aaKnown RBP3.41□□□□□ -1.86
VPS35-209ENST00000568642 TOM1L2Q6ZVM7 507 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 WAPLQ7Z5K2 1190 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 MOGAT3Q86VF5 341 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 ZDHHC13Q8IUH4 622 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 DENND1CQ8IV53 801 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 SYNE4Q8N205 404 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 ARL10Q8N8L6 244 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 KLHL23Q8NBE8 558 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 CHST14Q8NCH0 376 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 CHST13Q8NET6 341 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 GPBAR1Q8TDU6 330 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 AFAP1L1Q8TED9 768 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 NUDT8Q8WV74 236 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 RFFLQ8WZ73 363 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 COA7Q96BR5 231 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 RRP36Q96EU6 259 aaKnown RBP3.41□□□□□ -1.86
VPS35-209ENST00000568642 VMP1Q96GC9 406 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 BORCS6Q96GS4 357 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 APIPQ96GX9 242 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 RCC1LQ96I51 464 aaKnown RBP3.41□□□□□ -1.86
VPS35-209ENST00000568642 NUDT16L1Q9BRJ7 211 aaKnown RBP3.41□□□□□ -1.86
VPS35-209ENST00000568642 PDCD2LQ9BRP1 358 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 CELF4Q9BZC1 486 aaKnown RBP3.41□□□□□ -1.86
VPS35-209ENST00000568642 BTBD1Q9H0C5 482 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 NUP62CLQ9H1M0 184 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 PRDM12Q9H4Q4 367 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 JPH1Q9HDC5 661 aaPredicted RBP3.41□□□□□ -1.86
VPS35-209ENST00000568642 HELLSQ9NRZ9 838 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 ABCF3Q9NUQ8 709 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 FAM86C1Q9NVL1 165 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 NSMCE4AQ9NXX6 385 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 TLR7Q9NYK1 1049 aaKnown RBP3.41□□□□□ -1.86
VPS35-209ENST00000568642 AASSQ9UDR5 926 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 RALYQ9UKM9 306 aaKnown RBP3.41□□□□□ -1.86
VPS35-209ENST00000568642 ITGB1BP2Q9UKP3 347 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 SOX13Q9UN79 622 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 COQ6Q9Y2Z9 468 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 PCDHA11Q9Y5I1 949 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 WDFY4Q6ZS81 3184 aa3.41□□□□□ -1.86
VPS35-209ENST00000568642 DBX1A6NMT0 343 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 BOLA2-SMG1P6H3BVE0 249 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 PDE2AO00408 941 aaPredicted RBP3.4□□□□□ -1.87
VPS35-209ENST00000568642 ACKR2O00590 384 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 PRRG2O14669 202 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 RGS13O14921 159 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 GJB3O75712 270 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 FAM155BO75949 473 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 IGLV1-40P01703 118 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 SLC4A1P02730 911 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms