RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 CCDC73Q6ZRK6 1079 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 FKBP9P1Q75LS8 142 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 CPXCR1Q8N123 301 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 MB21D1Q8N884 522 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 TEX19Q8NA77 164 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 KLHL23Q8NBE8 558 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 LINC00301Q8NCQ3 95 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 GJA10Q969M2 543 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 RNF166Q96A37 237 aaPredicted RBP5.72□□□□□ -1.49
LDLR-209ENST00000558528 CDCA5Q96FF9 252 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 SLF1Q9BQI6 1058 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.72□□□□□ -1.49
LDLR-209ENST00000558528 RAB34Q9BZG1 259 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 MKRN2Q9H000 416 aaKnown RBP5.72□□□□□ -1.49
LDLR-209ENST00000558528 RANBP17Q9H2T7 1088 aaKnown RBP5.72□□□□□ -1.49
LDLR-209ENST00000558528 GBA2Q9HCG7 927 aaPredicted RBP5.72□□□□□ -1.49
LDLR-209ENST00000558528 RIC8AQ9NPQ8 531 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 C1orf112Q9NSG2 853 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 DDX19AQ9NUU7 478 aaKnown RBP5.72□□□□□ -1.49
LDLR-209ENST00000558528 SAMD15Q9P1V8 674 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 HCN2Q9UL51 889 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 KCNJ14Q9UNX9 436 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 LZTS1Q9Y250 596 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 CNPY2Q9Y2B0 182 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 HIF3AQ9Y2N7 669 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 BDP1A6H8Y1 2624 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 MYH2Q9UKX2 1941 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 MYH13Q9UKX3 1938 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 ABCB11O95342 1321 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.71□□□□□ -1.5
LDLR-209ENST00000558528 B4DLN1 442 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 GCOM1H8Y6P7 765 aaPredicted RBP5.71□□□□□ -1.5
LDLR-209ENST00000558528 CBX4O00257 560 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 POLR2MP0CAP2 368 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 CMA1P23946 247 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 HOXA7P31268 230 aaPredicted RBP5.71□□□□□ -1.5
LDLR-209ENST00000558528 SLC16A2P36021 539 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 ADH7P40394 386 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 NEK3P51956 506 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 ERVK-21P61565 698 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 DSG1Q02413 1049 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 PPIL2Q13356 520 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 RRP1BQ14684 758 aaKnown RBP5.71□□□□□ -1.5
LDLR-209ENST00000558528 DBN1Q16643 649 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 QRICH1Q2TAL8 776 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 INAVAQ3KP66 663 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 ALFQ53S48 1182 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 TTC38Q5R3I4 469 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 FAM83BQ5T0W9 1011 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 GDF6Q6KF10 455 aaPredicted RBP5.71□□□□□ -1.5
LDLR-209ENST00000558528 CCDC70Q6NSX1 233 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 MOXD1Q6UVY6 613 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 RSPO2Q6UXX9 243 aaPredicted RBP5.71□□□□□ -1.5
LDLR-209ENST00000558528 DLK2Q6UY11 383 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 PIK3AP1Q6ZUJ8 805 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 Q7L0L9 218 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 OTOP1Q7RTM1 612 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 NEK8Q86SG6 692 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 C12orf40Q86WS4 652 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 RASAL3Q86YV0 1011 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 TPH2Q8IWU9 490 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 ELOA2Q8IYF1 753 aaPredicted RBP5.71□□□□□ -1.5
LDLR-209ENST00000558528 C7orf61Q8IZ16 206 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 CBARPQ8N350 705 aaPredicted RBP5.71□□□□□ -1.5
LDLR-209ENST00000558528 ACER1Q8TDN7 264 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 BTN2A2Q8WVV5 523 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 PIBF1Q8WXW3 757 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 KIFC2Q96AC6 838 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 AHCYL2Q96HN2 611 aaKnown RBP5.71□□□□□ -1.5
LDLR-209ENST00000558528 TNIP3Q96KP6 325 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 USP28Q96RU2 1077 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 SELENOOQ9BVL4 669 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 PPCSQ9HAB8 311 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 FAM86C1Q9NVL1 165 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 NAGPAQ9UK23 515 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 PPP1R9AQ9ULJ8 1098 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 PCDHA6Q9UN73 950 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 DIS3Q9Y2L1 958 aaKnown RBP5.71□□□□□ -1.5
LDLR-209ENST00000558528 DAAM1Q9Y4D1 1078 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 AFG3L2Q9Y4W6 797 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 PCDHA8Q9Y5H6 950 aa5.71□□□□□ -1.5
LDLR-209ENST00000558528 ASTN2O75129 1339 aaPredicted RBP5.71□□□□□ -1.5
LDLR-209ENST00000558528 LAMA4Q16363 1823 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 ADM5C9JUS6 153 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 ATP2A1O14983 1001 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 SLC26A4O43511 780 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 KINO60870 393 aaKnown RBP5.7□□□□□ -1.5
LDLR-209ENST00000558528 PPFIA3O75145 1194 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 RGS9O75916 674 aaPredicted RBP5.7□□□□□ -1.5
LDLR-209ENST00000558528 FLOT1O75955 427 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 CRTAMO95727 393 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 CAVIN2O95810 425 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 AVPP01185 164 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 LTFP02788 710 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 ICAM1P05362 532 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 LIG1P18858 919 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 BDNFP23560 247 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 LONP1P36776 959 aaKnown RBP5.7□□□□□ -1.5
LDLR-209ENST00000558528 PRPHP41219 470 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 ADCYAP1R1P41586 468 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms