RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 SLC26A6Q9BXS9 759 aa11.21□□□□□ -0.61
SCFD1-220ENST00000556486 UNC45AQ9H3U1 944 aa11.21□□□□□ -0.61
SCFD1-220ENST00000556486 CHST12Q9NRB3 414 aa11.21□□□□□ -0.61
SCFD1-220ENST00000556486 DACT1Q9NYF0 836 aa11.21□□□□□ -0.61
SCFD1-220ENST00000556486 VPS54Q9P1Q0 977 aa11.21□□□□□ -0.61
SCFD1-220ENST00000556486 NAP1L2Q9ULW6 460 aaPredicted RBP11.21□□□□□ -0.61
SCFD1-220ENST00000556486 PCDHA4Q9UN74 947 aa11.21□□□□□ -0.61
SCFD1-220ENST00000556486 PIN4Q9Y237 131 aaKnown RBP11.21□□□□□ -0.61
SCFD1-220ENST00000556486 IRAK3Q9Y616 596 aa11.21□□□□□ -0.61
SCFD1-220ENST00000556486 CHD8Q9HCK8 2581 aa11.21□□□□□ -0.62
SCFD1-220ENST00000556486 DOCK6Q96HP0 2047 aa11.2□□□□□ -0.62
SCFD1-220ENST00000556486 F8W810 466 aa11.2□□□□□ -0.62
SCFD1-220ENST00000556486 INPPL1O15357 1258 aa11.2□□□□□ -0.62
SCFD1-220ENST00000556486 CHMP2AO43633 222 aa11.2□□□□□ -0.62
SCFD1-220ENST00000556486 KINO60870 393 aaKnown RBP11.2□□□□□ -0.62
SCFD1-220ENST00000556486 DDHD2O94830 711 aa11.2□□□□□ -0.62
SCFD1-220ENST00000556486 SRFP11831 508 aa11.2□□□□□ -0.62
SCFD1-220ENST00000556486 WEE1P30291 646 aa11.2□□□□□ -0.62
SCFD1-220ENST00000556486 POLGP54098 1239 aaPredicted RBP11.2□□□□□ -0.62
SCFD1-220ENST00000556486 TOB2Q14106 344 aaPredicted RBP11.2□□□□□ -0.62
SCFD1-220ENST00000556486 XKR3Q5GH77 459 aa11.2□□□□□ -0.62
SCFD1-220ENST00000556486 NOMO2Q5JPE7 1267 aa11.2□□□□□ -0.62
SCFD1-220ENST00000556486 DCLRE1AQ6PJP8 1040 aa11.2□□□□□ -0.62
SCFD1-220ENST00000556486 RUFY3Q7L099 469 aa11.2□□□□□ -0.62
SCFD1-220ENST00000556486 PPFIBP1Q86W92 1011 aa11.2□□□□□ -0.62
SCFD1-220ENST00000556486 TRIM22Q8IYM9 498 aa11.2□□□□□ -0.62
SCFD1-220ENST00000556486 ETNPPLQ8TBG4 499 aa11.2□□□□□ -0.62
SCFD1-220ENST00000556486 TBCKQ8TEA7 893 aa11.2□□□□□ -0.62
SCFD1-220ENST00000556486 SMG7Q92540 1137 aaKnown RBP11.2□□□□□ -0.62
SCFD1-220ENST00000556486 GJA10Q969M2 543 aa11.2□□□□□ -0.62
SCFD1-220ENST00000556486 ZNF274Q96GC6 653 aaPredicted RBP11.2□□□□□ -0.62
SCFD1-220ENST00000556486 RPP25Q9BUL9 199 aaKnown RBP11.2□□□□□ -0.62
SCFD1-220ENST00000556486 TEKT3Q9BXF9 490 aa11.2□□□□□ -0.62
SCFD1-220ENST00000556486 EMILIN2Q9BXX0 1053 aa11.2□□□□□ -0.62
SCFD1-220ENST00000556486 TM6SF1Q9BZW5 370 aa11.2□□□□□ -0.62
SCFD1-220ENST00000556486 SPATA6Q9NWH7 488 aaPredicted RBP11.2□□□□□ -0.62
SCFD1-220ENST00000556486 MTF2Q9Y483 593 aaPredicted RBP11.2□□□□□ -0.62
SCFD1-220ENST00000556486 CHD6Q8TD26 2715 aa11.19□□□□□ -0.62
SCFD1-220ENST00000556486 USP24Q9UPU5 2620 aa11.19□□□□□ -0.62
SCFD1-220ENST00000556486 ZNF623O75123 536 aa11.19□□□□□ -0.62
SCFD1-220ENST00000556486 MAFO75444 373 aaPredicted RBP11.19□□□□□ -0.62
SCFD1-220ENST00000556486 DEXIO95424 95 aa11.19□□□□□ -0.62
SCFD1-220ENST00000556486 POMCP01189 267 aa11.19□□□□□ -0.62
SCFD1-220ENST00000556486 CD72P21854 359 aa11.19□□□□□ -0.62
SCFD1-220ENST00000556486 NLRP5P59047 1200 aa11.19□□□□□ -0.62
SCFD1-220ENST00000556486 CSTF1Q05048 431 aaKnown RBP11.19□□□□□ -0.62
SCFD1-220ENST00000556486 SNW1Q13573 536 aaKnown RBP11.19□□□□□ -0.62
SCFD1-220ENST00000556486 GIT2Q14161 759 aa11.19□□□□□ -0.62
SCFD1-220ENST00000556486 AGERQ15109 404 aa11.19□□□□□ -0.62
SCFD1-220ENST00000556486 LPAL2Q16609 132 aa11.19□□□□□ -0.62
SCFD1-220ENST00000556486 TSSK4Q6SA08 328 aa11.19□□□□□ -0.62
SCFD1-220ENST00000556486 GLB1LQ6UWU2 654 aa11.19□□□□□ -0.62
SCFD1-220ENST00000556486 ZNF410Q86VK4 478 aa11.19□□□□□ -0.62
SCFD1-220ENST00000556486 PALB2Q86YC2 1186 aa11.19□□□□□ -0.62
SCFD1-220ENST00000556486 PJA1Q8NG27 643 aa11.19□□□□□ -0.62
SCFD1-220ENST00000556486 NCOA5Q9HCD5 579 aaKnown RBP11.19□□□□□ -0.62
SCFD1-220ENST00000556486 WDR6Q9NNW5 1121 aaKnown RBP11.19□□□□□ -0.62
SCFD1-220ENST00000556486 MRPL17Q9NRX2 175 aaKnown RBP11.19□□□□□ -0.62
SCFD1-220ENST00000556486 USP18Q9UMW8 372 aa11.19□□□□□ -0.62
SCFD1-220ENST00000556486 PRG3Q9Y2Y8 225 aaPredicted RBP11.19□□□□□ -0.62
SCFD1-220ENST00000556486 PPME1Q9Y570 386 aa11.19□□□□□ -0.62
SCFD1-220ENST00000556486 PCDHB11Q9Y5F2 797 aa11.19□□□□□ -0.62
SCFD1-220ENST00000556486 NUMBLQ9Y6R0 609 aa11.19□□□□□ -0.62
SCFD1-220ENST00000556486 A0A087WZ62 844 aa11.18□□□□□ -0.62
SCFD1-220ENST00000556486 TEX28O15482 410 aa11.18□□□□□ -0.62
SCFD1-220ENST00000556486 OFD1O75665 1012 aa11.18□□□□□ -0.62
SCFD1-220ENST00000556486 ADH1BP00325 375 aa11.18□□□□□ -0.62
SCFD1-220ENST00000556486 SFPQP23246 707 aaKnown RBP eCLIP11.18□□□□□ -0.62
SCFD1-220ENST00000556486 DNM2P50570 870 aa11.18□□□□□ -0.62
SCFD1-220ENST00000556486 UBXN2BQ14CS0 331 aa11.18□□□□□ -0.62
SCFD1-220ENST00000556486 NONOQ15233 471 aaKnown RBP eCLIP11.18□□□□□ -0.62
SCFD1-220ENST00000556486 C15orf39Q6ZRI6 1047 aa11.18□□□□□ -0.62
SCFD1-220ENST00000556486 MIER3Q7Z3K6 550 aa11.18□□□□□ -0.62
SCFD1-220ENST00000556486 KSR1Q8IVT5 923 aa11.18□□□□□ -0.62
SCFD1-220ENST00000556486 BLIDQ8IZY5 108 aa11.18□□□□□ -0.62
SCFD1-220ENST00000556486 ZNF707Q96C28 371 aaPredicted RBP11.18□□□□□ -0.62
SCFD1-220ENST00000556486 CHAMP1Q96JM3 812 aa11.18□□□□□ -0.62
SCFD1-220ENST00000556486 JPH2Q9BR39 696 aaPredicted RBP11.18□□□□□ -0.62
SCFD1-220ENST00000556486 FDXACB1Q9BRP7 624 aaPredicted RBP11.18□□□□□ -0.62
SCFD1-220ENST00000556486 GCOM2Q9BZD3 368 aaPredicted RBP11.18□□□□□ -0.62
SCFD1-220ENST00000556486 INO80BQ9C086 356 aaPredicted RBP11.18□□□□□ -0.62
SCFD1-220ENST00000556486 PIDD1Q9HB75 910 aa11.18□□□□□ -0.62
SCFD1-220ENST00000556486 KCNMB3Q9NPA1 279 aa11.18□□□□□ -0.62
SCFD1-220ENST00000556486 FAM105AQ9NUU6 356 aa11.18□□□□□ -0.62
SCFD1-220ENST00000556486 EPS15L1Q9UBC2 864 aa11.18□□□□□ -0.62
SCFD1-220ENST00000556486 CDV3Q9UKY7 258 aaKnown RBP11.18□□□□□ -0.62
SCFD1-220ENST00000556486 NRP1O14786 923 aa11.17□□□□□ -0.62
SCFD1-220ENST00000556486 TDP2O95551 362 aa11.17□□□□□ -0.62
SCFD1-220ENST00000556486 URODP06132 367 aa11.17□□□□□ -0.62
SCFD1-220ENST00000556486 RPL17P18621 184 aaKnown RBP11.17□□□□□ -0.62
SCFD1-220ENST00000556486 RAB27AP51159 221 aa11.17□□□□□ -0.62
SCFD1-220ENST00000556486 GPC5P78333 572 aa11.17□□□□□ -0.62
SCFD1-220ENST00000556486 CCT2P78371 535 aaKnown RBP11.17□□□□□ -0.62
SCFD1-220ENST00000556486 NTHL1P78549 312 aa11.17□□□□□ -0.62
SCFD1-220ENST00000556486 SSRP1Q08945 709 aaKnown RBP11.17□□□□□ -0.62
SCFD1-220ENST00000556486 PPP2R5CQ13362 524 aa11.17□□□□□ -0.62
SCFD1-220ENST00000556486 HTR4Q13639 388 aa11.17□□□□□ -0.62
SCFD1-220ENST00000556486 MTERF2Q49AM1 385 aa11.17□□□□□ -0.62
SCFD1-220ENST00000556486 PPP4R3AQ6IN85 833 aa11.17□□□□□ -0.62
SCFD1-220ENST00000556486 AGMOQ6ZNB7 445 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms