RNA–Protein interactions for RNA: ENST00000534389.2

CSDE1-216, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 601 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-216ENST00000534389 SLC5A5Q92911 643 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 FERMT2Q96AC1 680 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 ZBTB8AQ96BR9 441 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 MTMR8Q96EF0 704 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 ZSWIM3Q96MP5 696 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 WRNIP1Q96S55 665 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 MEIS3Q99687 375 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 SH3GL2Q99962 352 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 MMTAG2Q9BU76 263 aaKnown RBP3.55□□□□□ -1.84
CSDE1-216ENST00000534389 UTP14AQ9BVJ6 771 aaKnown RBP3.55□□□□□ -1.84
CSDE1-216ENST00000534389 MTFR1LQ9H019 292 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 FAM107BQ9H098 131 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 MRPL44Q9H9J2 332 aaKnown RBP3.55□□□□□ -1.84
CSDE1-216ENST00000534389 ATP6V0A4Q9HBG4 840 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 SLC40A1Q9NP59 571 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 KLC4Q9NSK0 619 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 SLC5A4Q9NY91 659 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 H2AFY2Q9P0M6 372 aaPredicted RBP3.55□□□□□ -1.84
CSDE1-216ENST00000534389 ARHGAP20Q9P2F6 1191 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 CPSF2Q9P2I0 782 aaKnown RBP3.55□□□□□ -1.84
CSDE1-216ENST00000534389 STAP2Q9UGK3 403 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 PUF60Q9UHX1 559 aaKnown RBP3.55□□□□□ -1.84
CSDE1-216ENST00000534389 TPCN1Q9ULQ1 816 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 HPCAL4Q9UM19 191 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 PPP2R2CQ9Y2T4 447 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.55□□□□□ -1.84
CSDE1-216ENST00000534389 PMF1-BGLAPU3KQ54 211 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 ADGRL3Q9HAR2 1447 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 NPHP3Q7Z494 1330 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 ATXN2Q99700 1313 aaKnown RBP3.54□□□□□ -1.84
CSDE1-216ENST00000534389 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP3.54□□□□□ -1.84
CSDE1-216ENST00000534389 UBA6A0AVT1 1052 aaPredicted RBP3.54□□□□□ -1.84
CSDE1-216ENST00000534389 PRAMEF22A3QJZ6 481 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 FAM90A27PA6NNH2 459 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 TMCO5BA8MYB1 307 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 IQCJ-SCHIP1C9J366 451 aaPredicted RBP3.54□□□□□ -1.84
CSDE1-216ENST00000534389 GOLGA6L19H0YKK7 550 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 ETV2O00321 342 aaPredicted RBP3.54□□□□□ -1.84
CSDE1-216ENST00000534389 ELL2O00472 640 aaPredicted RBP3.54□□□□□ -1.84
CSDE1-216ENST00000534389 EBAG9O00559 213 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 NEMP1O14524 444 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 EIF3HO15372 352 aaKnown RBP eCLIP3.54□□□□□ -1.84
CSDE1-216ENST00000534389 CAVIN2O95810 425 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 A1BGP04217 495 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 VIL1P09327 827 aaKnown RBP3.54□□□□□ -1.84
CSDE1-216ENST00000534389 LINGO3P0C6S8 592 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 RHOXF2BP0C7M4 288 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 ATP1A3P13637 1013 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 PECAM1P16284 738 aaPredicted RBP3.54□□□□□ -1.84
CSDE1-216ENST00000534389 SFPQP23246 707 aaKnown RBP eCLIP3.54□□□□□ -1.84
CSDE1-216ENST00000534389 CCND1P24385 295 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 USP8P40818 1118 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 PRPHP41219 470 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 ADCYAP1R1P41586 468 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 RAP1GAPP47736 663 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 CDR1P51861 262 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 HNRNPMP52272 730 aaKnown RBP eCLIP3.54□□□□□ -1.84
CSDE1-216ENST00000534389 EPHB3P54753 998 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 SLC8A3P57103 927 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 EVA1CP58658 441 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 FOXO4P98177 505 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 SETQ01105 290 aaPredicted RBP3.54□□□□□ -1.84
CSDE1-216ENST00000534389 DSG1Q02413 1049 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 PTH1RQ03431 593 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 ADCY1Q08828 1119 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 FAPQ12884 760 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 TBX2Q13207 712 aaPredicted RBP3.54□□□□□ -1.84
CSDE1-216ENST00000534389 STAT4Q14765 748 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 MTF1Q14872 753 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 NAA25Q14CX7 972 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 KARSQ15046 597 aaKnown RBP3.54□□□□□ -1.84
CSDE1-216ENST00000534389 ADCK5Q3MIX3 580 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 ZNF385BQ569K4 471 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 HABP4Q5JVS0 413 aaKnown RBP3.54□□□□□ -1.84
CSDE1-216ENST00000534389 THEMIS2Q5TEJ8 643 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 CD276Q5ZPR3 534 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 C6orf89Q6UWU4 347 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 DPP8Q6V1X1 898 aaPredicted RBP3.54□□□□□ -1.84
CSDE1-216ENST00000534389 STRA8Q7Z7C7 330 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 ANKRD18AQ8IVF6 992 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 NOSTRINQ8IVI9 506 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 CCAR1Q8IX12 1150 aaKnown RBP3.54□□□□□ -1.84
CSDE1-216ENST00000534389 FAM26EQ8N5C1 309 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 EFHBQ8N7U6 833 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 SMC1BQ8NDV3 1235 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 TTLL11Q8NHH1 800 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 MAGEC3Q8TD91 643 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 SH3RF2Q8TEC5 729 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 RPGRQ92834 1020 aaKnown RBP3.54□□□□□ -1.84
CSDE1-216ENST00000534389 SIGLEC10Q96LC7 697 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 TMEM209Q96SK2 561 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 ELF4Q99607 663 aaPredicted RBP3.54□□□□□ -1.84
CSDE1-216ENST00000534389 SMAD5Q99717 465 aaKnown RBP3.54□□□□□ -1.84
CSDE1-216ENST00000534389 RHOXF2Q9BQY4 288 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 PAGR1Q9BTK6 254 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 NUP58Q9BVL2 599 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 FTOQ9C0B1 505 aaKnown RBP eCLIP3.54□□□□□ -1.84
CSDE1-216ENST00000534389 ZCWPW1Q9H0M4 648 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 VCPKMTQ9H867 229 aa3.54□□□□□ -1.84
CSDE1-216ENST00000534389 CNTD2Q9H8S5 307 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms