RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 EIF3DO15371 548 aaKnown RBP eCLIP8.13□□□□□ -1.11
CD44-228ENST00000528455 BNIP3LO60238 219 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 C22orf31O95567 290 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 RSPH10BP0C881 870 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 PRCPP42785 496 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 NPTX2P47972 431 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 EFNA5P52803 228 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 NCKAP1LP55160 1127 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 PEX3P56589 373 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 SNRPFP62306 86 aaKnown RBP8.13□□□□□ -1.11
CD44-228ENST00000528455 IGBP1P78318 339 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 KCNA1Q09470 495 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 LAMTOR4Q0VGL1 99 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 DMP1Q13316 513 aaPredicted RBP8.13□□□□□ -1.11
CD44-228ENST00000528455 STIM1Q13586 685 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 TFDP1Q14186 410 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 SNX17Q15036 470 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 STX1AQ16623 288 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 FAM26FQ5R3K3 315 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 TAF2Q6P1X5 1199 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 FIGNL1Q6PIW4 674 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 MAEAQ7L5Y9 396 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 EPM2AIP1Q7L775 607 aaPredicted RBP8.13□□□□□ -1.11
CD44-228ENST00000528455 HAUS6Q7Z4H7 955 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 FAM178BQ8IXR5 827 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 METTL13Q8N6R0 699 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 TMEM174Q8WUU8 243 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 LMBR1Q8WVP7 490 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 TMEM143Q96AN5 459 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 FIZ1Q96SL8 496 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 LBHD1Q9BQE6 289 aaPredicted RBP8.13□□□□□ -1.11
CD44-228ENST00000528455 BPIFA3Q9BQP9 254 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 TMEM206Q9H813 350 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 POLD4Q9HCU8 107 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 SLC39A2Q9NP94 309 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 STARD7Q9NQZ5 370 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 PCDHGC4Q9Y5F7 938 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 A0A0U1RQG5 324 aaPredicted RBP8.12□□□□□ -1.11
CD44-228ENST00000528455 SMTNL1A8MU46 457 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 PDXKO00764 312 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 ATXN7O15265 892 aaPredicted RBP8.12□□□□□ -1.11
CD44-228ENST00000528455 TREHO43280 583 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 CYP2C9P11712 490 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 GLRA2P23416 452 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 BRD2P25440 801 aaKnown RBP8.12□□□□□ -1.11
CD44-228ENST00000528455 ZNF165P49910 485 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 CHMP4BP1P59074 171 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 MTMR3Q13615 1198 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 PCBP1Q15365 356 aaKnown RBP eCLIP8.12□□□□□ -1.11
CD44-228ENST00000528455 KNOP1Q1ED39 458 aaKnown RBP8.12□□□□□ -1.11
CD44-228ENST00000528455 BMT2Q1RMZ1 405 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 TRIM60Q495X7 471 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 CENPPQ6IPU0 288 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 GDF6Q6KF10 455 aaPredicted RBP8.12□□□□□ -1.11
CD44-228ENST00000528455 RSPH3Q86UC2 560 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 SERINC5Q86VE9 423 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 ZNF410Q86VK4 478 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 SFR1Q86XK3 245 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 TDHQ8IZJ6 230 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 MYOCDQ8IZQ8 938 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 ADSSL1Q8N142 457 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 TMEM161BQ8NDZ6 487 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 TRAPPC12Q8WVT3 735 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 HVCN1Q96D96 273 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 MAP7D2Q96T17 732 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 INO80BQ9C086 356 aaPredicted RBP8.12□□□□□ -1.11
CD44-228ENST00000528455 POLR3FQ9H1D9 316 aaPredicted RBP8.12□□□□□ -1.11
CD44-228ENST00000528455 TSPY26PQ9H489 355 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 GPRC5CQ9NQ84 441 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 KMT5AQ9NQR1 393 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 PRDM5Q9NQX1 630 aaPredicted RBP8.12□□□□□ -1.11
CD44-228ENST00000528455 STIM2Q9P246 746 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 CGNQ9P2M7 1197 aaKnown RBP8.12□□□□□ -1.11
CD44-228ENST00000528455 RWDD2AQ9UIY3 292 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 HCN2Q9UL51 889 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 SZT2Q5T011 3432 aa8.12□□□□□ -1.11
CD44-228ENST00000528455 MROH7Q68CQ1 1323 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 BICDL2A1A5D9 508 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 CCDC169A6NNP5 214 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 PSMA7O14818 248 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 IKBKBO14920 756 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 EFSO43281 561 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 CAND2O75155 1236 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 GCNT3O95395 438 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 ABL1P00519 1130 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 FAM157BP0CG42 384 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 SRGAP2CP0DJJ0 459 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 CCNE1P24864 410 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 NMT1P30419 496 aaKnown RBP8.11□□□□□ -1.11
CD44-228ENST00000528455 NLRP11P59045 1033 aaKnown RBP8.11□□□□□ -1.11
CD44-228ENST00000528455 PTENP60484 403 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 ZNF200P98182 395 aaPredicted RBP8.11□□□□□ -1.11
CD44-228ENST00000528455 TLE2Q04725 743 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 TNP2Q05952 138 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 ZNF211Q13398 564 aaPredicted RBP8.11□□□□□ -1.11
CD44-228ENST00000528455 DRP2Q13474 957 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 PTGISQ16647 500 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 DPCR1Q3MIW9 517 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 ANO6Q4KMQ2 910 aa8.11□□□□□ -1.11
CD44-228ENST00000528455 ANKRD33Q7Z3H0 272 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms