RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 KIAA0319Q5VV43 1072 aa22.89■■□□□ 1.25
VPS28-203ENST00000524521 ZPBP2Q6X784 338 aa22.89■■□□□ 1.25
VPS28-203ENST00000524521 CCDC73Q6ZRK6 1079 aa22.89■■□□□ 1.25
VPS28-203ENST00000524521 SV2BQ7L1I2 683 aa22.89■■□□□ 1.25
VPS28-203ENST00000524521 DYMQ7RTS9 669 aa22.89■■□□□ 1.25
VPS28-203ENST00000524521 PPFIBP1Q86W92 1011 aa22.89■■□□□ 1.25
VPS28-203ENST00000524521 RNF168Q8IYW5 571 aaPredicted RBP22.89■■□□□ 1.25
VPS28-203ENST00000524521 HASPINQ8TF76 798 aa22.89■■□□□ 1.25
VPS28-203ENST00000524521 SLC22A17Q8WUG5 538 aa22.89■■□□□ 1.25
VPS28-203ENST00000524521 B3GALT6Q96L58 329 aa22.89■■□□□ 1.25
VPS28-203ENST00000524521 ACAP3Q96P50 834 aa22.89■■□□□ 1.25
VPS28-203ENST00000524521 SMIM28A0A1B0GU29 152 aa22.88■■□□□ 1.25
VPS28-203ENST00000524521 CLDN3O15551 220 aa22.88■■□□□ 1.25
VPS28-203ENST00000524521 BRD1O95696 1058 aa22.88■■□□□ 1.25
VPS28-203ENST00000524521 NOLC1Q14978 699 aaKnown RBP eCLIP22.88■■□□□ 1.25
VPS28-203ENST00000524521 USP41Q3LFD5 358 aa22.88■■□□□ 1.25
VPS28-203ENST00000524521 KHSRPQ92945 711 aaKnown RBP eCLIP22.88■■□□□ 1.25
VPS28-203ENST00000524521 PPP1R10Q96QC0 940 aaKnown RBP22.88■■□□□ 1.25
VPS28-203ENST00000524521 POP1Q99575 1024 aaKnown RBP22.88■■□□□ 1.25
VPS28-203ENST00000524521 CHST7Q9NS84 486 aa22.88■■□□□ 1.25
VPS28-203ENST00000524521 TBX20Q9UMR3 447 aa22.88■■□□□ 1.25
VPS28-203ENST00000524521 C19orf67A6NJJ6 358 aa22.87■■□□□ 1.25
VPS28-203ENST00000524521 PPP6R2O75170 966 aa22.87■■□□□ 1.25
VPS28-203ENST00000524521 NMT1P30419 496 aaKnown RBP22.87■■□□□ 1.25
VPS28-203ENST00000524521 STAT6P42226 847 aa22.87■■□□□ 1.25
VPS28-203ENST00000524521 DSG1Q02413 1049 aa22.87■■□□□ 1.25
VPS28-203ENST00000524521 PKP1Q13835 747 aa22.87■■□□□ 1.25
VPS28-203ENST00000524521 SEZ6Q53EL9 994 aa22.87■■□□□ 1.25
VPS28-203ENST00000524521 ALKAL1Q6UXT8 129 aa22.87■■□□□ 1.25
VPS28-203ENST00000524521 PDILTQ8N807 584 aa22.87■■□□□ 1.25
VPS28-203ENST00000524521 C12orf76Q8N812 135 aaPredicted RBP22.87■■□□□ 1.25
VPS28-203ENST00000524521 SUSD6Q92537 303 aa22.87■■□□□ 1.25
VPS28-203ENST00000524521 DDX12PQ92771 950 aa22.87■■□□□ 1.25
VPS28-203ENST00000524521 DZANK1Q9NVP4 752 aa22.87■■□□□ 1.25
VPS28-203ENST00000524521 SF3B1O75533 1304 aaKnown RBP eCLIP22.86■■□□□ 1.25
VPS28-203ENST00000524521 A0A087X0B3 334 aa22.86■■□□□ 1.25
VPS28-203ENST00000524521 MYMKA6NI61 221 aa22.86■■□□□ 1.25
VPS28-203ENST00000524521 KIF4AO95239 1232 aa22.86■■□□□ 1.25
VPS28-203ENST00000524521 YEATS4O95619 227 aa22.86■■□□□ 1.25
VPS28-203ENST00000524521 SCP2P22307 547 aa22.86■■□□□ 1.25
VPS28-203ENST00000524521 LIG4P49917 911 aa22.86■■□□□ 1.25
VPS28-203ENST00000524521 MCL1Q07820 350 aa22.86■■□□□ 1.25
VPS28-203ENST00000524521 RARS2Q5T160 578 aaKnown RBP22.86■■□□□ 1.25
VPS28-203ENST00000524521 CES5AQ6NT32 575 aa22.86■■□□□ 1.25
VPS28-203ENST00000524521 RIN2Q8WYP3 895 aaPredicted RBP22.86■■□□□ 1.25
VPS28-203ENST00000524521 EPHX3Q9H6B9 360 aa22.86■■□□□ 1.25
VPS28-203ENST00000524521 TRIP11Q15643 1979 aa22.86■■□□□ 1.25
VPS28-203ENST00000524521 MYH15Q9Y2K3 1946 aa22.86■■□□□ 1.25
VPS28-203ENST00000524521 SPDYE4A6NLX3 237 aa22.85■■□□□ 1.25
VPS28-203ENST00000524521 HNRNPDLO14979 420 aaKnown RBP22.85■■□□□ 1.25
VPS28-203ENST00000524521 TEX28O15482 410 aa22.85■■□□□ 1.25
VPS28-203ENST00000524521 CLCN4P51793 760 aa22.85■■□□□ 1.25
VPS28-203ENST00000524521 ITIH3Q06033 890 aa22.85■■□□□ 1.25
VPS28-203ENST00000524521 CBX2Q14781 532 aaPredicted RBP22.85■■□□□ 1.25
VPS28-203ENST00000524521 XKR4Q5GH76 650 aa22.85■■□□□ 1.25
VPS28-203ENST00000524521 KANK3Q6NY19 840 aa22.85■■□□□ 1.25
VPS28-203ENST00000524521 KCNN1Q92952 543 aa22.85■■□□□ 1.25
VPS28-203ENST00000524521 SNX27Q96L92 541 aa22.85■■□□□ 1.25
VPS28-203ENST00000524521 FBXL18Q96ME1 805 aa22.85■■□□□ 1.25
VPS28-203ENST00000524521 FIZ1Q96SL8 496 aa22.85■■□□□ 1.25
VPS28-203ENST00000524521 PHF7Q9BWX1 381 aaPredicted RBP22.85■■□□□ 1.25
VPS28-203ENST00000524521 ADAM7Q9H2U9 754 aa22.85■■□□□ 1.25
VPS28-203ENST00000524521 GOLGA2P5Q9HBQ8 144 aa22.85■■□□□ 1.25
VPS28-203ENST00000524521 RXFP1Q9HBX9 757 aa22.85■■□□□ 1.25
VPS28-203ENST00000524521 CUTAO60888 179 aa22.84■■□□□ 1.25
VPS28-203ENST00000524521 ADH1AP07327 375 aa22.84■■□□□ 1.25
VPS28-203ENST00000524521 CLCNKBP51801 687 aa22.84■■□□□ 1.25
VPS28-203ENST00000524521 GTF2BQ00403 316 aa22.84■■□□□ 1.25
VPS28-203ENST00000524521 ZC2HC1CQ53FD0 456 aaPredicted RBP22.84■■□□□ 1.25
VPS28-203ENST00000524521 FAM171A1Q5VUB5 890 aa22.84■■□□□ 1.25
VPS28-203ENST00000524521 DCLRE1AQ6PJP8 1040 aa22.84■■□□□ 1.25
VPS28-203ENST00000524521 SFR1Q86XK3 245 aa22.84■■□□□ 1.25
VPS28-203ENST00000524521 CEP57Q86XR8 500 aa22.84■■□□□ 1.25
VPS28-203ENST00000524521 RPGRIP1Q96KN7 1286 aa22.84■■□□□ 1.25
VPS28-203ENST00000524521 UROC1Q96N76 676 aa22.84■■□□□ 1.25
VPS28-203ENST00000524521 ZMAT2Q96NC0 199 aaKnown RBP22.84■■□□□ 1.25
VPS28-203ENST00000524521 HAPLN2Q9GZV7 340 aa22.84■■□□□ 1.25
VPS28-203ENST00000524521 SLC38A7Q9NVC3 462 aa22.84■■□□□ 1.25
VPS28-203ENST00000524521 CDH22Q9UJ99 828 aa22.84■■□□□ 1.25
VPS28-203ENST00000524521 B3GAT3O94766 335 aa22.83■■□□□ 1.25
VPS28-203ENST00000524521 WEE2P0C1S8 567 aa22.83■■□□□ 1.25
VPS28-203ENST00000524521 ABCD1P33897 745 aa22.83■■□□□ 1.25
VPS28-203ENST00000524521 SOX4Q06945 474 aaPredicted RBP22.83■■□□□ 1.25
VPS28-203ENST00000524521 SLC10A6Q3KNW5 377 aa22.83■■□□□ 1.25
VPS28-203ENST00000524521 GLYCTKQ8IVS8 523 aa22.83■■□□□ 1.25
VPS28-203ENST00000524521 DNAJC19Q96DA6 116 aa22.83■■□□□ 1.25
VPS28-203ENST00000524521 TTPALQ9BTX7 342 aa22.83■■□□□ 1.25
VPS28-203ENST00000524521 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP22.83■■□□□ 1.25
VPS28-203ENST00000524521 CNTN3Q9P232 1028 aa22.83■■□□□ 1.25
VPS28-203ENST00000524521 PI4K2BG5E9Z4 385 aa22.82■■□□□ 1.24
VPS28-203ENST00000524521 MEFVO15553 781 aaPredicted RBP22.82■■□□□ 1.24
VPS28-203ENST00000524521 PIGRP01833 764 aa22.82■■□□□ 1.24
VPS28-203ENST00000524521 CLTAP09496 248 aa22.82■■□□□ 1.24
VPS28-203ENST00000524521 IDEP14735 1019 aa22.82■■□□□ 1.24
VPS28-203ENST00000524521 KCNE1P15382 129 aa22.82■■□□□ 1.24
VPS28-203ENST00000524521 RPL17P18621 184 aaKnown RBP22.82■■□□□ 1.24
VPS28-203ENST00000524521 IGFBP6P24592 240 aaPredicted RBP22.82■■□□□ 1.24
VPS28-203ENST00000524521 ELAVL2Q12926 359 aaKnown RBP22.82■■□□□ 1.24
VPS28-203ENST00000524521 UPP1Q16831 310 aa22.82■■□□□ 1.24
VPS28-203ENST00000524521 RTP2Q5QGT7 225 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms