RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 CYB5R4Q7L1T6 521 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 ANKRD23Q86SG2 305 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 MB21D2Q8IYB1 491 aaPredicted RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 DCLK2Q8N568 766 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 PPP1R13BQ96KQ4 1090 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 TRIM15Q9C019 465 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 SPATC1LQ9H0A9 340 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 DNAJC17Q9NVM6 304 aaKnown RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 POTEMA6NI47 508 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 LRRIQ3A6PVS8 624 aaPredicted RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 DYRK3O43781 588 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 PARNO95453 639 aaKnown RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 AVPR1AP37288 418 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 NBPF20Q3BBV1 942 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 CHSY1Q86X52 802 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 PPHLN1Q8NEY8 458 aaKnown RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 TMEM143Q96AN5 459 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 OTUB1Q96FW1 271 aaPredicted RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 SEZ6LQ9BYH1 1024 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 KIAA1683Q9H0B3 1180 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 CHST12Q9NRB3 414 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 SPACA6W5XKT8 324 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 ARHGAP42A6NI28 874 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 CCDC188H7C350 402 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 PQBP1O60828 265 aaKnown RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 ATP1A1P05023 1023 aaKnown RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 MBL2P11226 248 aaPredicted RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 AKT1P31749 480 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 DSG3P32926 999 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 SNX1Q13596 522 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 C10orf120Q5SQS8 335 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 ACBD5Q5T8D3 534 aaPredicted RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 POTEDQ86YR6 584 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 MFN1Q8IWA4 741 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 ARL8AQ96BM9 186 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 C18orf8Q96DM3 657 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 CFAP36Q96G28 342 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 NDEL1Q9GZM8 345 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 KDM4FA0A1W2PPD8 638 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 KRT38O76015 456 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 RASA1P20936 1047 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 DEUP1Q05D60 604 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 CACNB2Q08289 660 aaPredicted RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 CTXN3Q4LDR2 81 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 PAN2Q504Q3 1202 aaKnown RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 NBPF12Q5TAG4 269 aaPredicted RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 CCDC149Q6ZUS6 474 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 RASEFQ8IZ41 740 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 PPP2R2CQ9Y2T4 447 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 TMX2Q9Y320 296 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 IGSF9BQ9UPX0 1349 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 C3orf70A6NLC5 250 aaPredicted RBP4.49□□□□□ -1.69
VCAN-209ENST00000513016 SMIM24O75264 130 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 H2AFYO75367 372 aaKnown RBP4.49□□□□□ -1.69
VCAN-209ENST00000513016 LHX1P48742 406 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 WDR72Q3MJ13 1102 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 PPM1LQ5SGD2 360 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 C4orf22Q6V702 233 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 DEFB128Q7Z7B8 93 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 DSG4Q86SJ6 1040 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 DDX42Q86XP3 938 aaKnown RBP eCLIP4.49□□□□□ -1.69
VCAN-209ENST00000513016 RHOT1Q8IXI2 618 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 TAAR1Q96RJ0 339 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 KIFC3Q9BVG8 833 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 NEUROG2Q9H2A3 272 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 NRXN1Q9ULB1 1477 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 CLTCQ00610 1675 aaKnown RBP4.49□□□□□ -1.69
VCAN-209ENST00000513016 POTEFA5A3E0 1075 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 TBKBP1A7MCY6 615 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 SLC9A3R1O14745 358 aaPredicted RBP4.49□□□□□ -1.69
VCAN-209ENST00000513016 LZTS3O60299 673 aaPredicted RBP4.49□□□□□ -1.69
VCAN-209ENST00000513016 RHOBTB3O94955 611 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 ANP32DO95626 131 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 HMBSP08397 361 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 POTEIP0CG38 1075 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 ARHGAP25P42331 645 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 RGS4P49798 205 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 CDH18Q13634 790 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 POTEGQ6S5H5 508 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 POTEEQ6S8J3 1075 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 ACSF2Q96CM8 615 aaPredicted RBP4.49□□□□□ -1.69
VCAN-209ENST00000513016 GIMAP4Q9NUV9 329 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 FAM47E-STBD1D6RA91 191 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 APOL1O14791 398 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 NCAM2O15394 837 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 PRPF4O43172 522 aaKnown RBP eCLIP4.49□□□□□ -1.69
VCAN-209ENST00000513016 LUC7L3O95232 432 aaKnown RBP4.49□□□□□ -1.69
VCAN-209ENST00000513016 PDHBP11177 359 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 CDC25BP30305 580 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 GNL1P36915 607 aaPredicted RBP4.49□□□□□ -1.69
VCAN-209ENST00000513016 SLC1A1P43005 524 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 NAA35Q5VZE5 725 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 ZNF438Q7Z4V0 828 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 ATL2Q8NHH9 583 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 MTBPQ96DY7 904 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 GMCL1Q96IK5 515 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 C11orf70Q9BRQ4 267 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 C1QTNF7Q9BXJ2 289 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 SARS2Q9NP81 518 aaKnown RBP4.49□□□□□ -1.69
VCAN-209ENST00000513016 NAGPAQ9UK23 515 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms