RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 USP17L15C9J2P7 530 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 USP17L13C9JLJ4 530 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 USP17L11C9JVI0 530 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 USP17L18D6R9N7 530 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 USP17L22D6RA61 530 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 USP17L17D6RBQ6 530 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 USP17L19D6RCP7 530 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 USP17L20D6RJB6 530 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 ZBTB5O15062 677 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 SPOPO43791 374 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 EDF1O60869 148 aaKnown RBP18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 TRIM49P0CI25 452 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 TRIM49CP0CI26 452 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 MARK3P27448 753 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 POLD1P28340 1107 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 BTDP43251 543 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 MYL7Q01449 175 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 USP17L24Q0WX57 530 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 SLC15A2Q16348 729 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 FAM182BQ5T319 152 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 USP17L6PQ6QN14 398 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 MOXD1Q6UVY6 613 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 SBF2Q86WG5 1849 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 PSPC1Q8WXF1 523 aaKnown RBP18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 TRAIPQ9BWF2 469 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 BHMT2Q9H2M3 363 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 SLCO1B3Q9NPD5 702 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 CLDN3O15551 220 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 SORBS3O60504 671 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 GSTA2P09210 222 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 GAP43P17677 238 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 SLC18A1P54219 525 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 OCRLQ01968 901 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 KHDC1Q4VXA5 237 aaKnown RBP18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 C4orf50Q6ZRC1 276 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 ZNF804AQ7Z570 1209 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 RELL1Q8IUW5 271 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 RPUSD2Q8IZ73 545 aaKnown RBP18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 RIBC1Q8N443 379 aaPredicted RBP18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 PHC3Q8NDX5 983 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 LRRC8CQ8TDW0 803 aa18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 PAIP2Q9BPZ3 127 aaKnown RBP18.23■□□□□ 0.51
SQSTM1-211ENST00000506690 RNF8O76064 485 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 BCRP11274 1271 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 HSPA1LP34931 641 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 COG2Q14746 738 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 MEX3CQ5U5Q3 659 aaKnown RBP18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 FOXB2Q5VYV0 432 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 TTBK2Q6IQ55 1244 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 CCDC77Q9BR77 488 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 ANO3Q9BYT9 981 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 DMAC2Q9NW81 257 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 RGL1Q9NZL6 768 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 SCOCQ9UIL1 159 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 PRPF4O43172 522 aaKnown RBP eCLIP18.22■□□□□ 0.512e-8■■■■□ 26.4
SQSTM1-211ENST00000506690 PDK4Q16654 411 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 ZNF746Q6NUN9 644 aaPredicted RBP18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 TRABD2AQ86V40 505 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 CRYGNQ8WXF5 182 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 BTBD6Q96KE9 485 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 PWWP2AQ96N64 755 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 PCDHB18PQ96TA0 734 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 GORASP1Q9BQQ3 440 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 TRIM4Q9C037 500 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 UBN1Q9NPG3 1134 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 CHST7Q9NS84 486 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 ANAPC5Q9UJX4 755 aa18.22■□□□□ 0.51
SQSTM1-211ENST00000506690 IGKV6D-41A0A0C4DH26 115 aa18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 SFI1A8K8P3 1242 aa18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 TBX3O15119 743 aa18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 ATMINO43313 823 aaPredicted RBP18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 HNRNPCL1O60812 293 aaKnown RBP18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 GZMAP12544 262 aa18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 NMT1P30419 496 aaKnown RBP18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 SPARCL1Q14515 664 aa18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 ZC2HC1CQ53FD0 456 aaPredicted RBP18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 SLC45A4Q5BKX6 768 aa18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 SMIM5Q71RC9 77 aa18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 ZNF564Q8TBZ8 553 aaPredicted RBP18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 BICD1Q96G01 975 aa18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 MIPEPQ99797 713 aa18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 CYLDQ9NQC7 956 aa18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 SAR1AQ9NR31 198 aa18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 GRID1Q9ULK0 1009 aa18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 USP17L10C9JJH3 530 aa18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 MAN1A1P33908 653 aa18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 LAMB3Q13751 1172 aa18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 CTC1Q2NKJ3 1217 aa18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 TAF1BQ53T94 588 aaPredicted RBP18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 SNX30Q5VWJ9 437 aa18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 NUP85Q9BW27 656 aa18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 GLT8D2Q9H1C3 349 aa18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 FRMD4BQ9Y2L6 1034 aa18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 STK24Q9Y6E0 443 aa18.21■□□□□ 0.51
SQSTM1-211ENST00000506690 CYP1A2P05177 515 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 SKIP12755 728 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 ATF2P15336 505 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 EIF6P56537 245 aaKnown RBP18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 NR1H3Q13133 447 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 TMED2Q15363 201 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms