RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 LRG1P02750 347 aa4.97□□□□□ -1.61
USP54-217ENST00000498213 ZFYVE27Q5T4F4 411 aa4.97□□□□□ -1.61
USP54-217ENST00000498213 TRMT10BQ6PF06 316 aaKnown RBP4.97□□□□□ -1.61
USP54-217ENST00000498213 HHIPL2Q6UWX4 724 aa4.97□□□□□ -1.61
USP54-217ENST00000498213 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.97□□□□□ -1.61
USP54-217ENST00000498213 PLEKHH3Q7Z736 793 aa4.97□□□□□ -1.61
USP54-217ENST00000498213 ERO1BQ86YB8 467 aa4.97□□□□□ -1.61
USP54-217ENST00000498213 TXNDC5Q8NBS9 432 aaKnown RBP4.97□□□□□ -1.61
USP54-217ENST00000498213 TTLL11Q8NHH1 800 aa4.97□□□□□ -1.61
USP54-217ENST00000498213 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.97□□□□□ -1.61
USP54-217ENST00000498213 UHMK1Q8TAS1 419 aaKnown RBP4.97□□□□□ -1.61
USP54-217ENST00000498213 PTPRN2Q92932 1015 aa4.97□□□□□ -1.61
USP54-217ENST00000498213 COA7Q96BR5 231 aa4.97□□□□□ -1.61
USP54-217ENST00000498213 SRPK1Q96SB4 655 aaKnown RBP4.97□□□□□ -1.61
USP54-217ENST00000498213 POLR3GLQ9BT43 218 aa4.97□□□□□ -1.61
USP54-217ENST00000498213 CDIP1Q9H305 208 aa4.97□□□□□ -1.61
USP54-217ENST00000498213 IPPKQ9H8X2 491 aa4.97□□□□□ -1.61
USP54-217ENST00000498213 CATSPERZQ9NTU4 200 aa4.97□□□□□ -1.61
USP54-217ENST00000498213 MYRFQ9Y2G1 1151 aa4.97□□□□□ -1.61
USP54-217ENST00000498213 ZNF536O15090 1300 aa4.97□□□□□ -1.61
USP54-217ENST00000498213 COL1A1P02452 1464 aaPredicted RBP4.96□□□□□ -1.62
USP54-217ENST00000498213 TRIM43BA6NCK2 446 aa4.96□□□□□ -1.62
USP54-217ENST00000498213 ALADP13716 330 aa4.96□□□□□ -1.62
USP54-217ENST00000498213 CCND3P30281 292 aaPredicted RBP4.96□□□□□ -1.62
USP54-217ENST00000498213 RBM5P52756 815 aaKnown RBP eCLIP4.96□□□□□ -1.62
USP54-217ENST00000498213 EIF4A1P60842 406 aaKnown RBP4.96□□□□□ -1.62
USP54-217ENST00000498213 RPS8P62241 208 aaKnown RBP4.96□□□□□ -1.62
USP54-217ENST00000498213 GUCY1A3Q02108 690 aa4.96□□□□□ -1.62
USP54-217ENST00000498213 PPIL2Q13356 520 aa4.96□□□□□ -1.62
USP54-217ENST00000498213 PAN2Q504Q3 1202 aaKnown RBP4.96□□□□□ -1.62
USP54-217ENST00000498213 FAM209AQ5JX71 171 aa4.96□□□□□ -1.62
USP54-217ENST00000498213 STRIP1Q5VSL9 837 aa4.96□□□□□ -1.62
USP54-217ENST00000498213 KCTD1Q719H9 257 aa4.96□□□□□ -1.62
USP54-217ENST00000498213 RBM12BQ8IXT5 1001 aaKnown RBP4.96□□□□□ -1.62
USP54-217ENST00000498213 TRIM43Q96BQ3 446 aaPredicted RBP4.96□□□□□ -1.62
USP54-217ENST00000498213 PRMT6Q96LA8 375 aaPredicted RBP4.96□□□□□ -1.62
USP54-217ENST00000498213 PARK7Q99497 189 aaKnown RBP4.96□□□□□ -1.62
USP54-217ENST00000498213 DLL4Q9NR61 685 aa4.96□□□□□ -1.62
USP54-217ENST00000498213 DUSP10Q9Y6W6 482 aa4.96□□□□□ -1.62
USP54-217ENST00000498213 FLNBO75369 2602 aaKnown RBP4.96□□□□□ -1.62
USP54-217ENST00000498213 SIPA1L3O60292 1781 aaPredicted RBP4.96□□□□□ -1.62
USP54-217ENST00000498213 SH3TC1Q8TE82 1336 aa4.96□□□□□ -1.62
USP54-217ENST00000498213 C9orf118A6NHY6 69 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 GSTA4O15217 222 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 NKRFO15226 690 aaKnown RBP eCLIP4.95□□□□□ -1.62
USP54-217ENST00000498213 LTFP02788 710 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 FAHP16930 419 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 ZNF28P17035 718 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 CYP2B6P20813 491 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 GABREP78334 506 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 CALD1Q05682 793 aaKnown RBP4.95□□□□□ -1.62
USP54-217ENST00000498213 TCF15Q12870 199 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 MOGSQ13724 837 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 SF3B3Q15393 1217 aaKnown RBP4.95□□□□□ -1.62
USP54-217ENST00000498213 ST3GAL2Q16842 350 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 CFAP100Q494V2 611 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 FAM47CQ5HY64 1035 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 ZC3H12BQ5HYM0 836 aaKnown RBP4.95□□□□□ -1.62
USP54-217ENST00000498213 PRR31Q5SQ13 230 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 CC2D1BQ5T0F9 858 aaKnown RBP4.95□□□□□ -1.62
USP54-217ENST00000498213 KRT40Q6A162 431 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 TTLL5Q6EMB2 1281 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 ASCL5Q7RTU5 278 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 ZC3H7AQ8IWR0 971 aaKnown RBP4.95□□□□□ -1.62
USP54-217ENST00000498213 CLEC4DQ8WXI8 215 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 HERVK_113Q902F9 699 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 TRIB2Q92519 343 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 FBXW5Q969U6 566 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 PHACTR3Q96KR7 559 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 THUMPD2Q9BTF0 503 aaKnown RBP4.95□□□□□ -1.62
USP54-217ENST00000498213 DHRS4Q9BTZ2 278 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 TMEM39BQ9GZU3 492 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 BARX1Q9HBU1 254 aaPredicted RBP4.95□□□□□ -1.62
USP54-217ENST00000498213 SNTG2Q9NY99 539 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 MIS18AQ9NYP9 233 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 RBPJLQ9UBG7 517 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 CNOT11Q9UKZ1 510 aaKnown RBP4.95□□□□□ -1.62
USP54-217ENST00000498213 INVSQ9Y283 1065 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 COL4A1P02462 1669 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 MYO3BQ8WXR4 1341 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 MAPK8IP3Q9UPT6 1336 aa4.95□□□□□ -1.62
USP54-217ENST00000498213 DCHS1Q96JQ0 3298 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 TCP10L2B9ZVM9 353 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 DCXO43602 365 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 ENO2P09104 434 aaPredicted RBP4.94□□□□□ -1.62
USP54-217ENST00000498213 FAM153BP0C7A2 387 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 SRGAP2CP0DJJ0 459 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 KRT15P19012 456 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 PPP2R1AP30153 589 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 GLRBP48167 497 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 RALBP1Q15311 655 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 SURF1Q15526 300 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 NFE2L2Q16236 605 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 LONRF2Q1L5Z9 754 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 TRIM60Q495X7 471 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 DGLUCYQ7Z3D6 616 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 LRP10Q7Z4F1 713 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 NLGN4XQ8N0W4 816 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 ATOH1Q92858 354 aaPredicted RBP4.94□□□□□ -1.62
USP54-217ENST00000498213 CD244Q9BZW8 370 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms